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Report for CCDS93978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93978.1 Public Homo sapiens 6 PNISR 24 110 108 CCDS HistoryNCBI Gene:25957Re-query CCDS DB by CCDS ID:93978.1Re-query CCDS DB by GeneID:25957See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93978.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000681615.1 ENSP00000506295.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681615.1Link to Ensembl Protein Viewer:ENSP00000506295.1Re-query CCDS DB by Nucleotide ID:ENST00000681615Re-query CCDS DB by Protein ID:ENSP00000506295
Original member Current member NCBI NM_001322410.2 NP_001309339.1 Accepted alive Link to Nucleotide Sequence:NM_001322410.2Link to Protein Sequence:NP_001309339.1Re-query CCDS DB by Nucleotide ID:NM_001322410Re-query CCDS DB by Protein ID:NP_001309339Link to BLAST:NP_001309339.1
Original member Current member NCBI NM_001322412.2 NP_001309341.1 Accepted alive Link to Nucleotide Sequence:NM_001322412.2Link to Protein Sequence:NP_001309341.1Re-query CCDS DB by Nucleotide ID:NM_001322412Re-query CCDS DB by Protein ID:NP_001309341Link to BLAST:NP_001309341.1
Original member Current member NCBI NM_001322413.2 NP_001309342.1 Accepted alive Link to Nucleotide Sequence:NM_001322413.2Link to Protein Sequence:NP_001309342.1Re-query CCDS DB by Nucleotide ID:NM_001322413Re-query CCDS DB by Protein ID:NP_001309342Link to BLAST:NP_001309342.1

Chromosomal Locations for CCDS 93978.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 99400281 99400311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99400544 99401630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99402540 99402710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99403829 99403882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99404603 99404702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99406031 99406168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99408081 99408271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99409173 99409344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99410741 99410964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99412551 99412739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99414572 99414659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2445 nt):
ATGTGGGATCAAGGAGGACAGCCTTGGCAGCAGTGGCCCTTGAACCAGCAACAATGGATGCAGTCATTCC
AGCACCAACAGGATCCAAGCCAGATTGATTGGGCTGCATTGGCCCAAGCTTGGATTGCCCAAAGAGAAGC
TTCAGGACAGCAAAGCATGGTAGAACAACCACCAGGAATGATGCCAAATGGACAAGATATGTCTACAATG
GAATCTGGTCCAAACAATCATGGGAATTTCCAAGGGGATTCAAACTTCAACAGAATGTGGCAACCAGAAT
GGGGAATGCATCAGCAACCCCCACACCCCCCTCCAGATCAGCCATGGATGCCACCAACACCAGGCCCAAT
GGACATTGTTCCTCCTTCTGAAGACAGCAACAGTCAGGACAGTGGGGAATTTGCCCCTGACAACAGGCAT
ATATTTAACCAGAACAATCACAACTTTGGTGGACCACCCGATAATTTTGCAGTGGGGCCAGTGAACCAGT
TTGACTATCAGCATGGGGCTGCTTTTGGTCCACCGCAAGGTGGATTTCATCCTCCTTATTGGCAACCAGG
ACCTCCAGGACCTCCAGCACCTCCCCAGAATCGAAGAGAAAGGCCATCATCATTCAGGGATCGTCAGCGT
TCACCTATTGCACTTCCTGTGAAGCAGGAGCCTCCACAAATTGACGCAGTAAAACGCAGGACTCTTCCCG
CTTGGATTCGCGAAGGTCTTGAAAAAATGGAACGTGAAAAGCAGAAGAAATTGGAGAAAGAAAGAATGGA
ACAACAACGTTCACAATTGTCCAAAAAAGAAAAAAAGGCCACAGAAGATGCTGAAGGAGGGGATGGCCCT
CGTTTACCTCAGAGAAGTAAATTTGATAGTGATGAGGAAGAAGAAGACACTGAAAATGTTGAGGCTGCAA
GTAGTGGGAAAGTCACCAGAAGTCCATCCCCAGTTCCTCAAGAAGAGCACAGTGACCCTGAGATGACTGA
AGAGGAGAAAGAGTATCAAATGATGTTGCTGACAAAAATGCTTCTAACAGAAATTCTGCTGGATGTCACA
GATGAAGAAATTTATTACGTAGCCAAAGATGCACACCGCAAAGCAACGAAAGCTCCTGCAAAACAGCTGG
CACAGTCCAGTGCACTGGCTTCCCTCACTGGACTCGGTGGACTGGGTGGTTATGGATCAGGAGACAGTGA
AGATGAGAGGAGTGACAGAGGATCTGAGTCATCTGACACTGATGATGAAGAATTACGGCATCGAATCCGG
CAAAAACAGGAAGCTTTTTGGAGAAAAGAAAAAGAACAGCAGCTATTACATGATAAACAGATGGAAGAAG
AAAAGCAGCAAACAGAAAGGGTTACAAAAGAGATGAATGAATTTATCCATAAAGAGCAAAATAGTTTATC
ACTACTAGAAGCAAGAGAAGCAGACGGTGATGTGGTTAATGAAAAGAAGAGAACTCCAAATGAAACCACA
TCAGTTTTAGAACCAAAAAAAGAGCATAAAGAAAAAGAAAAACAAGGAAGGAGTAGGTCGGGAAGTTCTA
GTAGTGGTAGTTCCAGTAGCAATAGCAGAACTAGTAGTACTAGTAGTACTGTCTCTAGCTCTTCATACAG
TTCTAGCTCAGGTAGTAGTCGTACTTCTTCTCGGTCTTCTTCTCCTAAAAGGAAAAAGAGACACAGTAGG
AGTAGATCTCCAACAATCAAAGCTAGACGTAGCAGGAGTAGAAGCTATTCTCGCAGAATTAAAATAGAGA
GCAATAGGGCTAGGGTAAAGATTAGAGATAGAAGGAGATCTAATAGAAATAGCATTGAAAGAGAAAGACG
ACGAAATCGGAGTCCTTCCCGAGAGAGACGTAGAAGTAGAAGTCGCTCAAGGGATAGACGAACCAATCGT
GCCAGTCGCAGTAGGAGTCGAGATAGGCGTAAAATTGATGATCAACGTGGAAATCTTAGTGGGAACAGTC
ATAAGCATAAAGGTGAGGCTAAAGAACAAGAGAGGAAAAAGGAGAGGAGTCGAAGTATAGATAAAGATAG
GAAAAAGAAAGACAAAGAAAGGGAACGTGAACAGGATAAAAGAAAAGAGAAACAAAAAAGGGAAGAAAAA
GATTTTAAGTTCAGTAGTCAGGATGATAGATTAAAAAGGAAACGAGAAAGTGAAAGAACATTTTCTAGGA
GTGGTTCTATATCTGTTAAAATCATAAGACATGATTCTAGACAGGATAGTAAGAAAAGTACTACCAAAGA
TAGTAAAAAACATTCAGGCTCTGATTCTAGTGGAAGGAGCAGTTCTGAGTCTCCAGGAAGTAGCAAAGAA
AAGAAGGCTAAGAAGCCTAAACATAGTCGATCGCGATCCGTGGAGAAATCTCAAAGGTCTGGTAAGAAGG
CAAGCCGCAAACACAAGTCTAAGTCCCGATCAAGATCAACAACCCCTCCCCGTCGTAAACGCTGA

Translation (814 aa):
MWDQGGQPWQQWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQREASGQQSMVEQPPGMMPNGQDMSTM
ESGPNNHGNFQGDSNFNRMWQPEWGMHQQPPHPPPDQPWMPPTPGPMDIVPPSEDSNSQDSGEFAPDNRH
IFNQNNHNFGGPPDNFAVGPVNQFDYQHGAAFGPPQGGFHPPYWQPGPPGPPAPPQNRRERPSSFRDRQR
SPIALPVKQEPPQIDAVKRRTLPAWIREGLEKMEREKQKKLEKERMEQQRSQLSKKEKKATEDAEGGDGP
RLPQRSKFDSDEEEEDTENVEAASSGKVTRSPSPVPQEEHSDPEMTEEEKEYQMMLLTKMLLTEILLDVT
DEEIYYVAKDAHRKATKAPAKQLAQSSALASLTGLGGLGGYGSGDSEDERSDRGSESSDTDDEELRHRIR
QKQEAFWRKEKEQQLLHDKQMEEEKQQTERVTKEMNEFIHKEQNSLSLLEAREADGDVVNEKKRTPNETT
SVLEPKKEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPKRKKRHSR
SRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNRSPSRERRRSRSRSRDRRTNR
ASRSRSRDRRKIDDQRGNLSGNSHKHKGEAKEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEK
DFKFSSQDDRLKRKRESERTFSRSGSISVKIIRHDSRQDSKKSTTKDSKKHSGSDSSGRSSSESPGSSKE
KKAKKPKHSRSRSVEKSQRSGKKASRKHKSKSRSRSTTPPRRKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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