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Report for CCDS47466.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47466.2 Public Homo sapiens 6 PPIL6 24 110 108 CCDS HistoryNCBI Gene:285755Re-query CCDS DB by CCDS ID:47466.2Re-query CCDS DB by GeneID:285755See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 47466.1
The coding region has been updated to extend the N-terminus, and to represent an alternative splicing pattern that is more supported by the available transcript data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47466.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000440797.6 ENSP00000392257.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440797.6Link to Ensembl Protein Viewer:ENSP00000392257.2Re-query CCDS DB by Nucleotide ID:ENST00000440797Re-query CCDS DB by Protein ID:ENSP00000392257
Original member Current member NCBI NM_001111298.2 NP_001104768.2 Accepted alive Link to Nucleotide Sequence:NM_001111298.2Link to Protein Sequence:NP_001104768.2Re-query CCDS DB by Nucleotide ID:NM_001111298Re-query CCDS DB by Protein ID:NP_001104768Link to BLAST:NP_001104768.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104768.2 337 Q8IXY8-2 337 100% 0 0

Chromosomal Locations for CCDS 47466.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 109392826 109392937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109400035 109400170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109403031 109403108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109419187 109419243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109426847 109426994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109427094 109427156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109431157 109431345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109436104 109436199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109440456 109440590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGGCAAGGCCGCAGCCGTGCGGGCCCCCGCACGCTAGGTGCGGCTCGCCGTCGCTGCCGGAGCGGCCGC
TGCAGGTGAAGGTGGTGGGGCTCTTCAGCTGCCCCAACTTTCAGATTGCGAAGAGCGCCGCTGAGAATCT
GAAGAATAATCATCCATCCAAATTTGAAGATCCTATATTAGTTCCTCTTCAAGAATTTGCATGGCATCAA
TATCTACAGGAGAAAAAAAGGGAACTCAAAAATGAAACCTGGGAATATTCTTCCTCTGTGATTTCTTTTG
TTAATGGTCAGTTTCTGGGTGATGCATTGGATCTGCAGAAATGGGCCCACGAGGTGTGGGATATAGTTGA
CATTAAACCCTCTGCACTTTATGACGCACTCACTGAGGATTTTTCCGCTAAGTTCTTAAGAGACACCAAG
CATGATTTCGTGTTTTTGGACATTTGTATTGATTCTTCTCCAATTGGAAGATTGATTTTTGAGCTATACT
GTGATGTGTGTCCCAAAACATGTAAAAATTTTCAGGTCTTGTGCACAGGAAAAGCAGGGTTTTCTCAACG
TGGCATAAGACTACATTACAAAAATTCCATTTTTCATCGAATAGTACAGAATGGCTGGATACAAGGAGGG
GATATAGTGTATGGAAAAGGAGATAATGGAGAGTCGATTTATGGTCCAACATTTGAAGAGCTTTATGGAA
GCTTGAAAAGAAGTGTAAAGAGGCAGAAGGAAAGCAGAGGGGTTGGAAAGATCGAGAAATACCGAGATGA
AAACTTTTCAGTTCCTCATAATAAAAGAGGAGTACTTGGAATGGCCAACAAAGGCCGTCACAGCAACGGG
TCACAATTCTATATCACACTGCAAGCAACTCCTTATCTAGATAGAAAATTTGTGGCTTTTGGGCAACTGA
TTGAAGGAACAGAAGTGCTTAAACAACTAGAATTAGTTCCAACACAGAATGAAAGACCAATACATATGTG
TAGAATTACTGACAGTGGAGATCCTTATGCTTGA

Translation (337 aa):
MARPQPCGPPHARCGSPSLPERPLQVKVVGLFSCPNFQIAKSAAENLKNNHPSKFEDPILVPLQEFAWHQ
YLQEKKRELKNETWEYSSSVISFVNGQFLGDALDLQKWAHEVWDIVDIKPSALYDALTEDFSAKFLRDTK
HDFVFLDICIDSSPIGRLIFELYCDVCPKTCKNFQVLCTGKAGFSQRGIRLHYKNSIFHRIVQNGWIQGG
DIVYGKGDNGESIYGPTFEELYGSLKRSVKRQKESRGVGKIEKYRDENFSVPHNKRGVLGMANKGRHSNG
SQFYITLQATPYLDRKFVAFGQLIEGTEVLKQLELVPTQNERPIHMCRITDSGDPYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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