CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS27285.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
27285.2 |
Public |
Mus musculus |
14 |
Tsc22d1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:21807](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:27285.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:21807](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 14 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 27285.2 |
The coding region has been updated to extend the N-terminus to one that is also supported by available conservation data. The use of an alternative upstream would result in a protein that is 21 aa longer. |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 27285.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000048371.14 |
ENSMUSP00000044517.8 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000048371.14](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000044517.8](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000048371](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000044517](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_207652.3 |
NP_997535.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_207652.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_997535.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_207652](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_997535](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_997535.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_997535.2 |
1077 |
P62500-1 |
1077 |
99.8143% |
0 |
2 |
Chromosomal Locations for CCDS 27285.2
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3234 nt): ATGCACCAGCCGCCGGAGTCCACCGCCGCGGCGGCCGCTGCTGCAGACATTAGTGCTAGGAAGATGGCGC ACCCGGCAATGTTCCCTCGAAGGGGCAGCGGTGGTGGCAGCGCCTCTGCTCTCAATGCAGCAGGTACGGG CGTCAGTGGTGCTGCTCCATCTTCTGAAGATTTTCCTCCTCCTTCGCTGCTCCAGCCGCCGCCTCCTGCT GCATCTTCCACGCAGGGACCCCAGCCTCCGCCTCCACAAAGCCTGAACCTCCTCTCGCAGGCTCAGCTGC AGGGACAGCCTCTTGCGCCAGGCGGAACTCAGATGAAAAAGAAAAGTGGCTTCCAGATAACTAGCGTTAC TCCGGCTCAGATCTCTGCCAGCATCAGCTCCAACAACAGCATCGCGGAGGACACCGAGAGCTACGACGAT CTGGATGAGTCGCACACGGAAGATCTCTCCTCTTCCGAGATCCTCGACGTCTCCCTTTCCAGGGCCACTG ACTTAGGTGAGCCTGAACGAAGCTCCTCAGAGGAGACTCTGAATAACTTCCAGGAAGCTGAGACACCTGG GGCAGTCTCTCCTAACCAGCCCCACCTTCCTCAGCCTCATTTGCCTCACCTTCCACAACAGAACGTTGTG ATCAATGGGAATGCCCATCCCCACCACCTCCATCATCACCATCACCCTCATCATGGGCACCACCTTCACC ATGGGCACCATCATTCATCACATGCTGCTGTGGCCGGTCCATCCATTCCCGGAGGGCCACCCTCGAGCCC AGTGTCCAGGAAACTCTCTACAACTGGAAGTTCTGATGGTGGTGTGCCAGTCGCACCTCCTCCTGCAGTA CCATCGAGTGGCTTACCAGCATCAGTGATGACGAACATCCGTACTCCAAGTACTACAGGAAGCCTAGGTA TAAATTCGGTTACTGGCACGAGCGCTACGAATAATGTTAACATTGCTGCTGTGGGTAGTTTCAGTCCCAG TGTGACGAACAGCGTGCATGGTAATGCTAATATAAATACAAGCAATATCCCTAATGCTGCTAGCATAAGT GGTGGGCCTGGAGTTACCAGTGTTGTTAATTCGAGTATCTTGAGTGGCATGGGCAATGGTACCGTTTCTT CCTCTCCTGTTGCTAACAGTGTCCTTAATGCAGCTGCAGGTATCACTGTGGGAGTGGTTTCCAGTCAGCA GCAGCAGCAGCAGCAGCAGCAACCAACAGTTAACACATCGAGGTTCAGGGTTGTGAAGTTAGACTCTACT TCTGAACCCTTTAAAAAAGGTCGATGGACTTGCACAGAATTCTATGAGAAGGAAAACGCTGTGCCAGCTA CAGAAGGCGTGGCCGTCAATAAAGTGGTGGAGACGGTGAAGCAAACCCCCACGGAAGCATCGTCCTCGGA GAGGGAGAGCACTAGTGGGAGTTCTGTGAGCAGTAGTGTGAGCACACTGAGTCACTACACGGAGAGTGTG GGAAGTGGAGAGATGATGGGAGCCCCGGCTGTGGTGGCGCCGCAGCAGCCGCCGCTACCACCAGCGCCTC CAGGTCTTCAAGGTGTGGCTCTCCAACAGCTAGAGTTCAGTAGCCCTGCTCCACAGAGTATTGCGGCGGT TAGTATGCCACAGAGTATTTCTCAGTCACAGATGTCACAAGTACAGTTACAGCCTCAAGAGTTGAGCTTT CAGCAGAAGCAGACTCTTCAGCCTGTCCCTCTGCAAGCCACCATGAGTGCCGCAACTGGTATCCAGCCTT CCCCTGTCAGCGTGGTCGGCATCACGGCGGCTGTAGGTCAGCAGCCTTCTGTTTCCAGCCTGGCTCAACC GCAGCTGCCATATTCTCAGACAGCTCCTCCCGTGCAAACTCCTCTTCCAGGGGCACCACCCCAGCAGTTA CAATATGGGCAGCAGCAACCAATGGTTCCTGCGCAGATAGCCCCAGGCCATGGCCAGCCAGTGACTCAAA ATCCAACTTCAGAGTATGTGCAGCAGCAGCAGCAGCCAATATTTCAAGCAGCATTGTCCTCTGGGCAGTC CAGTTCCACGGGCACGGGGGCAGGAATATCAGTGATTCCTGTGGCTCAGGCACAGGGGATCCAGCTGCCA GGGCAGCCCACAGCAGTACAAACACAACCTGCAGGGGCGGCTGGGCAGCCCATTGGCCAGGCTCAAACAG CAGTGTCCACTGTACCAACTGGCGGTCAGATTGCAAGTATCGGTCAACAGGCAAACATACCCACTGCAGT ACAGCAGCCCTCTACCCAAGTTACACCTTCAGTTATTCAGCAAGGTGCTCCTCCATCTTCACAAGTAGTC CTACCTGCTCCAACCGGGATCATTCATCAGGGAGTTCAAACCCGTGCTTCAAGCCTTCCACAACAATTGG TCATTGCACCCCAGAGTACCTTGGTAACTGTGCCTCCCCAGCCACAGGGAGTAGAAACCGTGGCCCAAGG GGTTGTTTCCCAGCAGTTGCCCACAGGCAGTCCTCTGCCCTCTGCTAGCACTATTTCTGTTACAAATCAG GTTAGTTCAGCCGCTCCTTCTGGAATGCCTTCTGTCCCAACAAACTTAGTTCCACCACAGAATATAGCAC AACCCCCAGCCACCCAAAATGGCAGTTTGGTTCAAAGTGTTAGTCAATCTCCCTTGATAGCCACTAACAT AAATTTGCCTTTGGCACAACAGATACCACTAAGTTCTACTCAGTTCTCTACACAATCATTAGCTCAGGCC ATTGGAAGCCAAATGGAAGATGCCAGGCGCCCAGCGGAGCCCTCCTTAGGCGGCTTACCTCAGACTATGA GTGGTGACAGTGGGGGAATGTCAGCAGTTTCAGATGGGAGTAGCAGCAGCCTAGCAGCCCCTGCTTCTCT CTTCCCGTTGAAGGTGCTACCGCTGACAACACCCCTGGTGGATGGCGAGGACGAGAGCTCTGGTGCAAGT GTGGTAGCTATCGACAACAAAATAGAGCAAGCTATGGATCTGGTGAAAAGCCATTTGATGTATGCGGTGA GGGAGGAAGTGGAAGTTCTGAAGGAGCAGATCAAAGAACTAATAGAGAAAAACTCCCAGCTGGAGCAGGA GAACAATCTGCTGAAGACGCTGGCCAGTCCGGAGCAGCTCGCCCAGTTTCAGGCCCAGCTGCAGACTGGC TCCCCTCCGGCCACCACGCAGCCACAGGGGACCACACAGCCCCCTGCACAGCCAGCATCCCAGGGCTCAG GATCAACCGCATAG
Translation (1077 aa): MHQPPESTAAAAAAADISARKMAHPAMFPRRGSGGGSASALNAAGTGVSGAAPSSEDFPPPSLLQPPPPA ASSTQGPQPPPPQSLNLLSQAQLQGQPLAPGGTQMKKKSGFQITSVTPAQISASISSNNSIAEDTESYDD LDESHTEDLSSSEILDVSLSRATDLGEPERSSSEETLNNFQEAETPGAVSPNQPHLPQPHLPHLPQQNVV INGNAHPHHLHHHHHPHHGHHLHHGHHHSSHAAVAGPSIPGGPPSSPVSRKLSTTGSSDGGVPVAPPPAV PSSGLPASVMTNIRTPSTTGSLGINSVTGTSATNNVNIAAVGSFSPSVTNSVHGNANINTSNIPNAASIS GGPGVTSVVNSSILSGMGNGTVSSSPVANSVLNAAAGITVGVVSSQQQQQQQQQPTVNTSRFRVVKLDST SEPFKKGRWTCTEFYEKENAVPATEGVAVNKVVETVKQTPTEASSSERESTSGSSVSSSVSTLSHYTESV GSGEMMGAPAVVAPQQPPLPPAPPGLQGVALQQLEFSSPAPQSIAAVSMPQSISQSQMSQVQLQPQELSF QQKQTLQPVPLQATMSAATGIQPSPVSVVGITAAVGQQPSVSSLAQPQLPYSQTAPPVQTPLPGAPPQQL QYGQQQPMVPAQIAPGHGQPVTQNPTSEYVQQQQQPIFQAALSSGQSSSTGTGAGISVIPVAQAQGIQLP GQPTAVQTQPAGAAGQPIGQAQTAVSTVPTGGQIASIGQQANIPTAVQQPSTQVTPSVIQQGAPPSSQVV LPAPTGIIHQGVQTRASSLPQQLVIAPQSTLVTVPPQPQGVETVAQGVVSQQLPTGSPLPSASTISVTNQ VSSAAPSGMPSVPTNLVPPQNIAQPPATQNGSLVQSVSQSPLIATNINLPLAQQIPLSSTQFSTQSLAQA IGSQMEDARRPAEPSLGGLPQTMSGDSGGMSAVSDGSSSSLAAPASLFPLKVLPLTTPLVDGEDESSGAS VVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTG SPPATTQPQGTTQPPAQPASQGSGSTA
|