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Report for CCDS27769.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
27769.1 |
Public |
Mus musculus |
15 |
Prickle1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:106042](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:27769.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:106042](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 15 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 27769.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000048982.10 |
ENSMUSP00000049204.4 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000048982.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000049204.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000048982](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000049204](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000109255.2 |
ENSMUSP00000104878.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000109255.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000104878.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000109255](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000104878](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001033217.5 |
NP_001028389.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001033217.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001028389.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001033217](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001028389](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001028389.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001364846.1 |
NP_001351775.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001364846.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001351775.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001364846](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001351775](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001351775.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 27769.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2499 nt): ATGCCTTTGGAGATGGAACCGAAAATGAGCAAACTGGTCTTCGGGTGCCAGAGAAGCTCCACATCAGATG ATGATTCCGGCTGTGCACTTGAAGAGTATGCATGGGTCCCACCGGGCCTCAGGCCCGAGCAGATCCAGCT CTATTTCGCATGCTTGCCAGAGGAAAAGGTTCCTTATGTTAACAGCCCTGGGGAGAAACACAGGATTAAA CAGCTCCTGTACCAGTTGCCTCCACACGATAACGAGGTGCGGTACTGCCAGTCTTTGAGCGAAGAAGAGA AGAAGGAGCTGCAGGTGTTCAGTGCTCAGAGGAAGAAAGAAGCTCTGGGGAGAGGAACCATCAAACTCTT GTCCAGAGCTGTGATGCACGCCGTGTGTGAGCAGTGTGGGCTGCAGATGAATGGAGGGGAGGTGGCCGTG TTCGCCTCCCGTGCAGGACCTGGAGTATGCTGGCACCCGTCCTGCTTTGTCTGCTTCACGTGTAATGAAC TACTGGTCGACCTCATCTATTTCTATCAGGATGGAAAAATCCACTGTGGCAGGCACCACGCTGAACTGCT CAAGCCTCGGTGCTCAGCCTGTGATGAGATCATTTTTGCTGACGAGTGCACGGAAGCCGAGGGTCGCCAC TGGCACATGAAGCATTTCTGCTGTCTGGAATGTGAGACAGTCCTGGGAGGGCAGAGATATATCATGAAGG ACGGCCGCCCCTTCTGCTGTGGCTGCTTCGAGTCTCTCTACGCTGAGTACTGCGAAACCTGTGGGGAGCA TATTGGTGTGGACCACGCACAGATGACCTACGACGGGCAGCACTGGCACGCCACAGAGGCCTGCTTTTCC TGTGCGCAGTGTAAGGCCTCGTTGCTGGGATGCCCCTTCCTCCCGAAACAAGGTCAGATTTACTGCTCCA AGACCTGCAGCCTTGGGGAAGACATCCACGCCTCTGACTCCTCGGACTCCGCCTTCCAGTCAGCCAGATC CAGAGACTCTCGCAGGAGCGTGAGGATGGGCAGAAGCAGCCGCTCCGCCGACCAGTGCCGACAGTCTCTT CTCTTGTCTCCCGCCCTGAACTACAAGTTCCCGGGTCTCTCCGGCAACGCTGACGACACCCTTTCCCGGA AGCTGGATGACGTGAGCCTCGCCAGCAGGCAGGGAGCAGGTTTCGCTAACGAGGAATTCTGGAAAGCCAG AGTGGAGCAGGAAGCCTCCGAAGACCCCGAAGAATGGGCTGAGCATGAAGATTATATGACGCAGCTCCTC CTCAAGTTCGGCGACAAAAACCTCTTCCAGCAGCAGAGCAGCGAGGTGGATCCGAGAGCCAGCGAGCACT GGATACCCGACAACATGGTTACGAATAAGCCCGAGGTAAAGCCGAATCACCAGGGCCTCGCGAGTAAAAA GTATCAGTCTGATATGTACTGGGCCCAGTCCCAAGACGGGCTGGGTGACTCTGCCTACGGCAGCCATCCA GGCCCCGCCAGCAGCCGCAGGCTGCAAGAGCTAGATCTGGACCACGGTGCTGCGGGATATACTCATGACC AAAGCCAGTGGTATGAAGACTCCCTGGAGTGTCTATCTGACTTGAAACCAGAACAGAGTATCCGGGATTC TATGGATTCTTTGGCGTTGTCCAACATCACAGGGGCATCAGTGGATGGAGAAAGCAAGCCAAGACCGTCA TTATATTCTCTCCAAAACTTTGAGGAGATAGAGGCAGAAGATTGTGAGAAAATGAGCAATATGGGAACTC TGAACTCTTCCATGCTGCACAGGAGTGCAGAATCCTTACAAAGTCTGAACTCAGGGCTGTGCCCAGAAAA AATTCTACCTGAGGAAAAACCAGCACACCTGCCGGTGCTCAGGAGATCCAAGTCCCAGTCCCGACCACAG CAGGTCAAATTTTCAGATGACGTCATTGACAACGGAAGCTACGACATCGAAATCCGGCAGCCTCCCATGA GCGAACGGACTCGGAGACGGGCGTATCACTTTGAAGAGAGGGGATCCAGGCCTCACCACCATCGCCACCG GAGAAGCAGAAAGTCTCGGTCCGACAACGCCCTGAACCTGGTCACGGAAAGGAAGTACTCCGCCAAGGAC AGACTTCGGCTGTACACCCCCGATAACTATGAGAAATTCATACAGAATAAAAGCGCCCGGGAGCTCCAAG CCTACATGCAGAACGCCAACCTCTATAGCCAGTATGCCCATGCCACGTCTGATTACGCCCTGCAGAACCC AGGGATGAACCGGTTTCTGGGGCTCTGCGGCGAGGACGACGACTCGTGGTGTTCGTCCTCCACGTCCTCC TCCGACTCAGAAGAAGAAGGCTATTTCCTTGGCCAGCCGATCCCTCAGCCACGGCCACAGAGATTCACCT ACTATACAGATGACCTTTCTAGCCCGGCTTCCGCACTGCCCACCCCACAGTTTACTCAGAGGACAACTAA ATCCAAGAAGAAAAAAGGACACAAGGGCAAAAACTGTATCATTTCTTAA
Translation (832 aa): MPLEMEPKMSKLVFGCQRSSTSDDDSGCALEEYAWVPPGLRPEQIQLYFACLPEEKVPYVNSPGEKHRIK QLLYQLPPHDNEVRYCQSLSEEEKKELQVFSAQRKKEALGRGTIKLLSRAVMHAVCEQCGLQMNGGEVAV FASRAGPGVCWHPSCFVCFTCNELLVDLIYFYQDGKIHCGRHHAELLKPRCSACDEIIFADECTEAEGRH WHMKHFCCLECETVLGGQRYIMKDGRPFCCGCFESLYAEYCETCGEHIGVDHAQMTYDGQHWHATEACFS CAQCKASLLGCPFLPKQGQIYCSKTCSLGEDIHASDSSDSAFQSARSRDSRRSVRMGRSSRSADQCRQSL LLSPALNYKFPGLSGNADDTLSRKLDDVSLASRQGAGFANEEFWKARVEQEASEDPEEWAEHEDYMTQLL LKFGDKNLFQQQSSEVDPRASEHWIPDNMVTNKPEVKPNHQGLASKKYQSDMYWAQSQDGLGDSAYGSHP GPASSRRLQELDLDHGAAGYTHDQSQWYEDSLECLSDLKPEQSIRDSMDSLALSNITGASVDGESKPRPS LYSLQNFEEIEAEDCEKMSNMGTLNSSMLHRSAESLQSLNSGLCPEKILPEEKPAHLPVLRRSKSQSRPQ QVKFSDDVIDNGSYDIEIRQPPMSERTRRRAYHFEERGSRPHHHRHRRSRKSRSDNALNLVTERKYSAKD RLRLYTPDNYEKFIQNKSARELQAYMQNANLYSQYAHATSDYALQNPGMNRFLGLCGEDDDSWCSSSTSS SDSEEEGYFLGQPIPQPRPQRFTYYTDDLSSPASALPTPQFTQRTTKSKKKKGHKGKNCIIS
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