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Report for CCDS39272.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
39272.1 |
Public |
Mus musculus |
5 |
Rsrc2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:208606](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:39272.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:208606](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 5 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 39272.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000057795.11 |
ENSMUSP00000049942.5 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000057795.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000049942.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000057795](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000049942](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000050827.13 |
ENSMUSP00000050563.7 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000050827.13](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000050563.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000050827](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000050563](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001359860.1 |
NP_001346789.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001359860.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001346789.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001359860](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001346789](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001346789.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001359861.1 |
NP_001346790.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001359861.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001346790.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001359861](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001346790](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001346790.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_025438.2 |
NP_079714.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_025438.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_079714.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_025438](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_079714](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_079714.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 39272.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1131 nt): ATGATAAGAACCAACTTCTTGTTAAAACAGGGAAGAAGACATGAGTCCAAAGATAAGTCCTCTAAGAGAC ACAAGTCTGAGGAGCACAATGACAAAGAACATTCTTCTGACAAAGGAAGAGAGCGATTAAATTCATCTGA GAATGGTGAGGACAGACATAAACGCAAAGAAAGGAAGTCATCACGGGGCAGAAGTCACTCAAGGTCTAGA TCGCGTGAAAGGCGCCATCGCAGTAGAAGCAGGGAAAGGAAGAAGTCTCGATCGAGGAGTAGGGATCGGA AAAAGTCTCGATCCAGAAGCAGAGACAGGAAGAAGTCAAGATCTAGAAGCAGGGATAGGAAACGAAGGAT CAGAACTCGTTCCCGATCCAGATCCAGACACAGGCATAGGACTAGAAGCAGGAGCAGATCAAGGAGTCGA AGTCGAGATAGAAAGAAGAGAATTGAAAAACCAAGAAGATTTAGCAGAAGCCTAAGCCGGACACCTAGTC CACCTCCCTTCAGAGGCAGAAACACAGCAATGGACGCTCAAGAAGCACTAGCTAGGAGATTAGAAAGGGC AAAGAAATTACAAGAACAACGAGAAAAGGAAATGGTTGAAAAGCAGAAACAACAAGAAATGGCTGCAGCA GCTGCAGCCACTGGAGGTTCAGTTCTTAATGTTGCTGCACTGTTGGCATCAGGAACGCAGGTTACTCCTC AGATAGCTATGGCAGCTCAAATGGCAGCCCTGCAAGCTAAAGCCTTGGCAGAGACTGGCATAGCAGTGCC CAGCTACTACAACCCAGCAGCTGTGAATCCAATGAAGTTTGCTGAGCAAGAGAAAAAGAGGAAAATGCTC TGGCAAGGCAAGAAAGAAGGCGACAAATCTCAGTCTGCTGAAATCTGGGAAAAATTAAATTTTGGAAACA AGGACCAAAATGTCAAATTTAGAAAGTTAATGGGCATTAAGAGTGAAGATGAAGCTGGCTGTAGCTCCGT TGATGAAGAAAGTTATAAGACTTTAAAGCAACAAGAAGAAGTTTTTCGCAATCTTGATGCTCAGTATGAA ATGGCAAGATCACAAACCCACACACAAAGAGGAATGGGTTTGGGTTTCACATCTTCAATGCGTGGAATGG ATACAGTTTGA
Translation (376 aa): MIRTNFLLKQGRRHESKDKSSKRHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSR SRERRHRSRSRERKKSRSRSRDRKKSRSRSRDRKKSRSRSRDRKRRIRTRSRSRSRHRHRTRSRSRSRSR SRDRKKRIEKPRRFSRSLSRTPSPPPFRGRNTAMDAQEALARRLERAKKLQEQREKEMVEKQKQQEMAAA AAATGGSVLNVAALLASGTQVTPQIAMAAQMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKML WQGKKEGDKSQSAEIWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEESYKTLKQQEEVFRNLDAQYE MARSQTHTQRGMGLGFTSSMRGMDTV
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