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Report for CCDS52264.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
52264.1 |
Public |
Mus musculus |
7 |
Magel2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:27385](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:52264.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:27385](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 52264.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000080403.6 |
ENSMUSP00000079265.5 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000080403.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000079265.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000080403](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000079265](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_013779.2 |
NP_038807.4 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_013779.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_038807.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_013779](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_038807](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_038807.4](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_038807.4 |
1284 |
Q9QZ04 |
1284 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 52264.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3855 nt): ATGTCGCAGCTAAGTACGAATCTGGGGGATTCCAGCCCTCCGGAGTCCCCAGTGCCTGCAGTCCATAGCC GCCCTACGGTTCTGATGCGGGCTCCGCCTGCTTCCTCCCGGGCTCCTCCTGTCCCCTGGGATCCACCTCC AGTGGACTTGCAGGCTCCCATGGCTGCTTGGCAGGCTCCTCAACCTGCCTGGGAGGCTCCGGAGGGCCAG CTGCCTGCCCCAGTGGCTCAGCTGGCCCAGCCTCCTGGTCTAGGGGCCCCAATGGTCCAGGCTCCACCGC TCGGAGGGGGGATGGCCAAGCCTCCAACTCCTGGAGTCTTGATGGTCCATCAGCCCCCTCCGGGAGCCCC CATGGCCCAGTCTTCAACTCCGGGAGTCCTGATGCTACATCCTTCTGTCACGGGGGCCCCTTTGGCTCAT CCTCCTCCCCCAGGAACCCCGATGACACACCCTCCCGGGACCTCGATGGCGCACCCTCCTCCTCCTCCTC CTCCCCCTCCTCCTCCTCCTCCTCCTGGGACCCCAATGACCCACCCACCTCCTCCTGGGACTCCGATGGG TCACCATCCTCCTCCTGGGAACCCTATGACCCATCCTCCACCGGGGAACCCGATGGTGCATCCTCTCACT CATGGAGCCCCGATGGTCCATGGGGGACCACATGGAACTCCAATGCCGCATGTTCCCATTACGGGGACAC CGATAGCCCAGCAGCCAACTCCAGGAGTCCTGATGGCCCAGCAGCTGACACCGGGAGTCCTGATGGTCCA GCCGCCTGCTCCGGGAGCTCCGATGGTCCAGCCACCTCCACAGGCTGCCTTGATGACCCAGCCTGCACCT TCGATTACTCCGATGGCCAAGCCTCCAGGTCCTGGTGTCGTGATGATCCATCCTCCAGGTGCCAGAGGTC CAATCATTCAGACTCCAGTATCAGGAGCACCAATGGCTCAGACAGTGCTGCCCCCTGGGCAGCCTCTGGC CACTTGGGCCCCACAGGGTCAGCCTTTGATCCTACAAATCCAGTCTCAAGTCATAAGGGCTCCTCCACAG GTTCCCTCTGTACCACAAGCCCCCCAGGTACAGCTGGCCACACCCCCAGGCTGGCAAGCCACCACACCCA ACTGGCAGGTGACCCCCCAGGGGTGGCCAGCAACGCCTTTGACATGGCAGGCTACACAGGTGACCTGGCA GGCCCCCACAATAGCCTGGCAGGCCACTCAACCTGGGCGCCAAGGGCACTCAACCATTCGTACTGGTCAC ACACCCATTCGACCTGGACCAGCTCCATTGCTTCGCCAGATACCTCCTATGATCCGTCAGATCCAACCTG TGATGAGGCAAGCCCCACCACTGATCCGACAGGTCCCTATCAGACCAGCTCCACATGGCATAGCAAGCCA GCCTCAGCTGTGGCAGGTCCTGCCACCCCCACCTCCACTGCGGCAGGCTCCACAGGCTCGTCTACTGCTC CCGAGGGTACCAGGAACAGGCCAGGTGTCTACAGTACCACCAGTTGCTCAGATACATTTGGTGCCACAGT CAGGCCCACAGGTGCCCCAGACAGTACTGCCAGCCCAACTGTCTATCCCAATTCCTGTACCCCAGGCTGC TGCTCAGTCTGCTCCCCGGACTGTGCATTGCCCACCCATCATCTGGCAGGCCCCCAAAGGCCAGGCCCCG GTGCCACAGGAGCTCCCAGTGCCACAGGAGCTCCCGGTGCCACAGGAGCTCCCGGTGCCACAAGAGGTCC CGGTTCCACAGGAGATCCCGGTGCCACAGGAGATCCCGGTGCCACAGGAGCTCCCGGTTCCACAGGAGCT CCCGGTGCCACAGGAGCTCCCAGTGCCACAAGAGCTCCCGGTGCCACAGGAGCTCCCAGTGCCACAGGAG CTCCCGGTGCCACAGGAGCTCCCGGTGCCACAGGAGCTCCCGGTGCCATTGGAGTTCCAGGAGGTACAGC AGGCCCAGGCAGTGGGCTGGCGGGCACCCAAGGTACCTCCTCACTTCTGGCAGCCTGTGTCTGCCCAGGA GGCCCAGGAGCAGGCCACTCAGATCGCCCATGTGGAGCAGCAGCAGCCCTTTCAGGGAGCTCCAGCCTCC TCCAAGGCACTGCAAACTCAGCTGCCGACCCACCAGGCCCAAGCCTCTGGCTTGCAGGCAGAACTGCCTT CAGTGCAGCTGCAGCCTTCTTGGCAAGGCCCACTGCCCATGTTGCAGGCCCAGCCTGGAGCCTCTGCCAC ACTGGCAAACTTTCCCCGGGGCTCCACTCGATCACGTATGGCTCCATCAGGAGAACCTGGCCCCTCTTCT CTAGAACCTCGGGGCCCTCCTAGGGAACGTAGGGCACCTGCAAGGGACAAAAAGGGTCCTCCAAAAGAGC GCATGTTCATTGGTGCCACTTTCTGTGCTCCAAGGGGGGCATCAGCATCCAGGGCATACGTGCCAACTGC CTGGAAAAACTTGCCTGCCACATCAGAGACCTTTCCTGCCACCTCAAGGGTCTTTCCATCTACCTCTCAT TTCCAGCCTGCCTCTTCTAATGCCTTTAGAGGTCCATCTGCCGCCTCAGAGAGCCCAAAGTCACTGCCAT TTGCTCTGCAGGATCCTTATGCCTGCGTAGAGGCCCTGCCTGCAGTTCCCTGGGTTCCGTATCCAGATGG AAATGCCTCATCAGCATGTAAGTCAGTGCCTGCCATCTTGATGGTGGCAGCAGCTGCCCCCCAGGCAAGT GCCACTGCTGCAGAGGCCTCTAAGTCTTCAGAGCCGCCAAGACGCCCCGGCAAAGCCACCAGGAAGAAGA AGCATCTGGAACCCAAAGAAGACAACTGTGGCCACAGGCTCTCCTCACGTGACTGGCGGGGGCCCCGAAC CTGGGGCAATCCCAGTCATTCTGACTGGGAGATTCAGAGGGCTATGCAGCTCCTGGGGGACCGGGAATCC CTCTACACTCCGCAGGGCCTGAATGACTGGGGGTGCCCCAACACTTCTAGGATGCCAAGGAGCTTGGAGG GCCCTAGCACTTCACGGGACCAGGAATTCTGTGGTGACTCGGGTGGGTCTCAGACATGGATGGCTTCTGA GGTCCCAAGCGTCTCTCGGGGATCCAGTGCTGCTCAGGAGGACCCTGATAGGGAGAGTCAGCCCTTATCT CCCTTAGATGAGAGAGCAAACGCTTTGGTGCAGTTTCTCTTGGTCAAAGACCAAGCCAAGGTGCCTGTCC AGCTCTCGGAGATGGTAAATGTTGTCATCCGAGAATACAAAGACGACAGCTTAGACATCATCAACCGTGC CAACACTAAGCTGGAGTGCACCTTTGGTTGTCAACTGAAGGAAGTTGACACCAAAACCCACACTTACATC ATCGTCAACAAGATGGCGTACCCTCAGTGTAATTTGCTGGCATCCTATTTAGAGAGGCCAAAGTTCAGCC TCCTGATGGTGGTCTTGAGCCTCATCTTTATGAAAGGCTACTGTATCAGGGAGAATCTGCTCTTTAGTTT TCTGTTCCAGCTAGGGCTGGATGTCCAGGAGACAAGTGGTCTCTTCAGAATTACAAAGAAGCTCATCACC AGTGTGTTTGTGAGACACAGGTACCTAGAGTACAGGCAAATCCCGTTCACTGAGCCTGCAGAATACGAGC TTCTCTGGGGGCCCCGGGCATTCCTCGAAACCAACAGGGTGCACATCTTGAGATTTTTGGCCGCACTCTA CGAGAACCAGCCCCAGATCTGGTCATGCCAGTACCTTGACTCACTGGCAGAGTTAGAATACAAGGACGCA AATGCCGCCGCCGAAGAGTCCCATGACAGCGATGATGATGCCCACGACCCCACCAGCAGTCCCCATCCTC ACTAA
Translation (1284 aa): MSQLSTNLGDSSPPESPVPAVHSRPTVLMRAPPASSRAPPVPWDPPPVDLQAPMAAWQAPQPAWEAPEGQ LPAPVAQLAQPPGLGAPMVQAPPLGGGMAKPPTPGVLMVHQPPPGAPMAQSSTPGVLMLHPSVTGAPLAH PPPPGTPMTHPPGTSMAHPPPPPPPPPPPPPPGTPMTHPPPPGTPMGHHPPPGNPMTHPPPGNPMVHPLT HGAPMVHGGPHGTPMPHVPITGTPIAQQPTPGVLMAQQLTPGVLMVQPPAPGAPMVQPPPQAALMTQPAP SITPMAKPPGPGVVMIHPPGARGPIIQTPVSGAPMAQTVLPPGQPLATWAPQGQPLILQIQSQVIRAPPQ VPSVPQAPQVQLATPPGWQATTPNWQVTPQGWPATPLTWQATQVTWQAPTIAWQATQPGRQGHSTIRTGH TPIRPGPAPLLRQIPPMIRQIQPVMRQAPPLIRQVPIRPAPHGIASQPQLWQVLPPPPPLRQAPQARLLL PRVPGTGQVSTVPPVAQIHLVPQSGPQVPQTVLPAQLSIPIPVPQAAAQSAPRTVHCPPIIWQAPKGQAP VPQELPVPQELPVPQELPVPQEVPVPQEIPVPQEIPVPQELPVPQELPVPQELPVPQELPVPQELPVPQE LPVPQELPVPQELPVPLEFQEVQQAQAVGWRAPKVPPHFWQPVSAQEAQEQATQIAHVEQQQPFQGAPAS SKALQTQLPTHQAQASGLQAELPSVQLQPSWQGPLPMLQAQPGASATLANFPRGSTRSRMAPSGEPGPSS LEPRGPPRERRAPARDKKGPPKERMFIGATFCAPRGASASRAYVPTAWKNLPATSETFPATSRVFPSTSH FQPASSNAFRGPSAASESPKSLPFALQDPYACVEALPAVPWVPYPDGNASSACKSVPAILMVAAAAPQAS ATAAEASKSSEPPRRPGKATRKKKHLEPKEDNCGHRLSSRDWRGPRTWGNPSHSDWEIQRAMQLLGDRES LYTPQGLNDWGCPNTSRMPRSLEGPSTSRDQEFCGDSGGSQTWMASEVPSVSRGSSAAQEDPDRESQPLS PLDERANALVQFLLVKDQAKVPVQLSEMVNVVIREYKDDSLDIINRANTKLECTFGCQLKEVDTKTHTYI IVNKMAYPQCNLLASYLERPKFSLLMVVLSLIFMKGYCIRENLLFSFLFQLGLDVQETSGLFRITKKLIT SVFVRHRYLEYRQIPFTEPAEYELLWGPRAFLETNRVHILRFLAALYENQPQIWSCQYLDSLAELEYKDA NAAAEESHDSDDDAHDPTSSPHPH
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