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Report for CCDS50318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50318.1 Public Mus musculus 18 Mex3c 23 108 98 CCDS HistoryNCBI Gene:240396Re-query CCDS DB by CCDS ID:50318.1Re-query CCDS DB by GeneID:240396See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50318.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091852.4 ENSMUSP00000089463.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091852.4Link to Ensembl Protein Viewer:ENSMUSP00000089463.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000091852Re-query CCDS DB by Protein ID:ENSMUSP00000089463
Original member Current member NCBI NM_001039214.4 NP_001034303.3 Accepted alive Link to Nucleotide Sequence:NM_001039214.4Link to Protein Sequence:NP_001034303.3Re-query CCDS DB by Nucleotide ID:NM_001039214Re-query CCDS DB by Protein ID:NP_001034303Link to BLAST:NP_001034303.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034303.3 652 Q05A36 652 100% 0 0

Chromosomal Locations for CCDS 50318.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 73573044 73573776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73589571 73590796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1959 nt):
ATGCCAAGCGGCAGCTCCGCGGCCCTGGCCCTGGCCCTGGCGGCGGCCCCGGCCCCCCTGCCGCAGCCGC
CT
CCGCTGCCGCCGCCGCCGCCCGCGGGAGGCCCAGAGCTCGAAGGGGACGGGCTGCTGCTGAGGGAGCG
C
CTGGCCGCGCTAGGCCTCGACGACCCCAGCCCGGCGGAGCCCGGCGCCCCGGCGCTCAGGGCCGCGGCG
GTG
GCGGCGGCGGCGGCGGCGCAGTGCCAGGCCCGGCGGGCGACCGGGCTGGCTCCGGAGGAGCCTGGCC
GC
CTCGCGACCTCCGAGACGGCGGAGCTGGAGCTGGAGGTGGACGAAGAGGAGGGGGAGGAAGCGGAGCT
G
GACGGAGAACTGCTGGAGGAGGAGGAGCTGGAGGAGGCAGAGGAGGAGGACCGGCCGTCGCTGCTGCTG
TTG
TCGCCGCCCGCGGCCACCGCCTCCCAGACTCAGCCGATCCCGGGCGGGCCCCTGGGGTCGGTGCTGC
TG
CCGGCCGCGGGCTTCGATGCCCGGGAGGCCGCGGCGGCAGGGGTGCTGTACGGAGGGGACGATGCCCA
G
GGCATGATGGCGGCGATGCTGTCCCACGCCTACGGCCCCGGCGGCGGCGGGGCCGCCGCTGCCGCCCTG
AAC
GGAGAGCAAGCGGCCCTGCTGAGAAGGAAGAGCGTCAACACCACCGAGTGCGTCCCCGTGCCCAGTT
CC
GAGCATGTCGCTGAGATTGTCGGACGCCAGGGTTGTAAAATTAAAGCACTGAGAGCCAAGACAAACAC
G
TATATCAAGACACCTGTTCGTGGTGAAGAACCCATTTTTGTTGTCACTGGACGGAAAGAAGATGTTGCC
ATG
GCCAAAAGAGAAATCCTCTCGGCTGCAGAGCACTTTTCTATGATTCGTGCATCTCGAAACAAAAATG
GT
CCTGCACTAGGAGGGTTATCGTGTAGTCCTAATCTGCCTGGTCAAACCACAGTCCAAGTCAGGGTCCC
C
TATCGTGTGGTAGGGCTAGTGGTTGGACCAAAAGGAGCAACAATTAAGAGAATTCAGCAACAGACCCAC
ACG
TACATAGTTACTCCGAGCAGAGATAAGGAGCCAGTCTTTGAAGTCACAGGGATGCCCGAAAATGTTG
AT
CGAGCACGAGAAGAGATAGAAATGCATATCGCCATGCGTACCGGAAACTACATAGAGCTCAATGAAGA
A
AATGATTTCCATTATAACGGTACCGATGTGAGCTTTGAAGGTGGCACTCTTGGCTCTGCATGGCTCTCT
TCC
AATCCAGTTCCTCCAAGCCGAGCAAGAATGATGTCTAACTATCGCAATGATAGTTCTAGCTCTCTAG
GA
AGTGGCTCCACTGATTCCTATTTTGGGAGCAATAGGCTAGCTGACTTTAGTCCAACAAGCCCATTTAG
C
ACAGGGAACTTTTGGTTTGGAGATACACTACCATCTGTAGGCTCAGAAGATCTTACAGTAGACTCTCCT
GCC
TTTGACTCTTTACCAACATCTGCTCAAACTATCTGGACTCCATTTGAACCAGTTAACCCACTCTCTG
GC
TTTGGGAGTGATCCTTCTGGTAACATGAAGACTCAGCGTAGAGGAAGTCAGCCATCAACTCCTCGTCT
G
TCTCCTACATTTCCTGAGAGCATAGAACACCCACTTGCTCGAAGGGTGAGGAGTGACCCACCTAGTACA
GGC
AACCATGTTGGCCTTCCAATATACATCCCTGCTTTTTCTAATGGTACCAATAGTTACTCCTCTTCCA
AT
GGTGGTTCCACCTCTAGCTCACCTCCAGAATCAAGAAGAAAGCACGACTGTGTGATTTGCTTTGAGAA
T
GAAGTTATTGCTGCCCTAGTTCCATGTGGCCACAACCTCTTCTGCATGGAATGTGCCAACAAGATCTGT
GAA
AAGAGAACGCCGTCATGTCCAGTTTGCCAGACAGCTGTTACTCAGGCAATCCAAATTCACTCTTAA


Translation (652 aa):
MPSGSSAALALALAAAPAPLPQPPPLPPPPPAGGPELEGDGLLLRERLAALGLDDPSPAEPGAPALRAAA
V
AAAAAAQCQARRATGLAPEEPGRLATSETAELELEVDEEEGEEAELDGELLEEEELEEAEEEDRPSLLL
L
SPPAATASQTQPIPGGPLGSVLLPAAGFDAREAAAAGVLYGGDDAQGMMAAMLSHAYGPGGGGAAAAAL
N
GEQAALLRRKSVNTTECVPVPSSEHVAEIVGRQ
GCKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDVA
M
AKREILSAAEHFSMIRASRNKNGPALGGLSCSPNLPGQTTVQVRVPYRVVGLVVGPKGATIKRIQQQTH
T
YIVTPSRDKEPVFEVTGMPENVDRAREEIEMHIAMRTGNYIELNEENDFHYNGTDVSFEGGTLGSAWLS
S
NPVPPSRARMMSNYRNDSSSSLGSGSTDSYFGSNRLADFSPTSPFSTGNFWFGDTLPSVGSEDLTVDSP
A
FDSLPTSAQTIWTPFEPVNPLSGFGSDPSGNMKTQRRGSQPSTPRLSPTFPESIEHPLARRVRSDPPST
G
NHVGLPIYIPAFSNGTNSYSSSNGGSTSSSPPESRRKHDCVICFENEVIAALVPCGHNLFCMECANKIC
E
KRTPSCPVCQTAVTQAIQIHS




Links Key
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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