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Report for CCDS29041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29041.1 Public Mus musculus 18 Epc1 23 108 98 CCDS HistoryNCBI Gene:13831Re-query CCDS DB by CCDS ID:29041.1Re-query CCDS DB by GeneID:13831See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29041.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028100.12 ENSMUSP00000028100.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028100.12Link to Ensembl Protein Viewer:ENSMUSP00000028100.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028100Re-query CCDS DB by Protein ID:ENSMUSP00000028100
Original member Current member NCBI NM_027497.3 NP_081773.1 Accepted alive Link to Nucleotide Sequence:NM_027497.3Link to Protein Sequence:NP_081773.1Re-query CCDS DB by Nucleotide ID:NM_027497Re-query CCDS DB by Protein ID:NP_081773Link to BLAST:NP_081773.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081773.1 813 Q8C9X6-1 813 100% 0 0

Chromosomal Locations for CCDS 29041.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 6437235 6437307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6439592 6439955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6440049 6440190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6441122 6441243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6448905 6449257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6450069 6450217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6450297 6450386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6450466 6450639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6452233 6452392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6453509 6453657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6454187 6454393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6455189 6455334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6462832 6462991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6490463 6490615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2442 nt):
ATGAGTAAACTGTCGTTTCGGGCGCGGGCGCTGGACGCCTCGAAGCCGCTGCCGGTCTTCCGCTGTGAGG
AT
CTGCCCGACCTGCACGAATACGCCTCGATAAACCGGGCCGTGCCGCAGATGCCCACCGGGATGGAGAA
G
GAAGAGGAGTCGGAACACCATCTTCAGCGGGCTATTTCTGCACAGCAGGTGTACGGCGAGAAGCGGGAT
AAC
ATGGTTATTCCAGTTCCTGAAGCAGAGAGTAACATCGCTTACTATGAGTCCATATACCCTGGGGAGT
TC
AGGATGCCAAAGCAGCTCATTCACATACAGCCTTTTAGCTTGGACGCTGAACAGCCTGATTACGATCT
G
GATTCTGAAGATGAAGTATTTGTGAATAAACTGAAGAAGAAAATGGACATCTGCCCATTGCAGTTTGAG
GAG
ATGATTGACCGGCTAGAAAAAGGCAGCGGTCAGCAGCCAGTCAGTCTGCAGGAAGCCAAACTACTTC
TA
AAAGAAGATGATGAGTTAATTAGAGAAGTTTATGAATACTGGATTAAAAAGAGGAAAACCTGCCGGGG
G
TCATCACTTATCCCGTTGGTAAAACAGGAAAAGCGAGATGGTTCTAGCACAAATGATCCTTACGTGGCT
TTT
AGAAGACGAACTGAGAAAATGCAAACTCGGAAAAACCGTAAGAATGATGAAGCCTCATATGAGAAAA
TG
CTCAAGCTGCGCCGCGATCTCAGCCGGGCTGTCACCATCCTGGAAATGATCAAGAGACGGGAGAAGAG
T
AAACGGGAGCTGCTGCACCTGACCCTGGAAATCATGGAGAAGAGGTATAATTTAGGTGACTATAGTGGA
GAG
ATCATGTCTGAGGTCATGGCACAGAGACAGCCAGTGAAGCCTACTTATGCCATCCCCATCATCCCGA
TT
ACTAACAGCAGCCAGTTCAAACACCAGGATGCCACGGACTCGAAGGAGTTCAAAGTTAACAAGCAAGA
T
AAGGCTGATCTTATCCGGCCGAAGCGCAAATATGAAAAGAAGCCCAAAGTCTTACCCCCATCTGCTGCC
GCC
CCTCAGCAGCAGAGTCCTGCTGCACTGCCAGGCTTCAGTGCTAAAGACTTAAACCAGTACGACTTCC
CC
AGCTCAGATGAAGAGCCTCTGTCACAGGTTTTGTCTGGCTCTTCGGAAGCTGAGGAAGAGAATGACCC
T
GATGGCCCTTTTGCTTTCCGTAGGAAAGCAGGCTGTCAGTACTATGCTCCTCATTTAGACCAAACTGGC
AAC
TGGCCCTGGACTAGCCCTAAAGATGGAGGCCTGGGGGATGTGCGATATAGATATTGCTTAACTACTC
TC
ACCGTACCCCAGAGGTGTCTTGGATTTGCACGAAGACGGGTCGGACGTGGTGGAAGGGTCGTGCTGGA
C
AGAGCGCATTCAGACTATGACAGTATGTTTCACCACCTGGATTTGGACATGCTTTCCTCACCACAACCT
TCT
CCAGTCAATCAGTTTGCCAATACCTCAGAACCCAATACCTCGGACAGATCTTCCTCTAAAGACCTCA
GT
CAGATACTAGTCGATATCAAATCATGTAGATGGCGGCACTTTAGGCCTCGGACACCATCCCTGCCTGA
C
AGTGACAGTGGTGAACTCTCCAGTAGAAAGTTACACAGGAGTATCAGTCGAGCAGGAGCAGCACAGCCT
GGG
GCCCACACGTGCAGCACCTCCACCCAGAACAGAAGTAGCAGTGGCTCAGCACACTGTGCATTCACAG
CC
GAACAGTACCAGCAGCACCAGCAGCAGCTGGCACTCATGCAGCAGCAGCAGCTTGCGCAGACTCAGCA
G
CAGCAGCAAGCAAATAGTAGTTCCTCTGCCGCCGCGCAACAGGGTTTTGTTTCTAAGACGTTGGACTCT
GCT
AGTGCACAGTTTGCTGCTTCTGCTTTGATGACGTCGGAACAGCTGCTGGGGTTCAAGGTGAAGGATG
AT
GTGGTGCTCGGGCTCGGGGTGAATGGCGTCCTTCCTGCCTCAGGAGTATACAAGGGCTTACACCTCAG
T
AGCACTACACCAACGGCACTTGTACATACGAGTCCTTCGACAGCAGGTTCAACTTTGTTACAGCCTTCA
AAT
ATTACACAGACTTCGGGTTCCCACAGCTCACTGAGTCACCAAGTAACTGCTGCCAGCTCTGCAACAA
CT
CAGGTTCTGTTTGGGAACAACATCCGATTAACTGTCCCCTCATCTGTCCCCACTGTCAACTCTGTCAC
C
CCAATAAACGCACGGCATATACCTAGGACTTTAAGTGCTGTTCCGCCATCTGCCTTAAAGCTGGCTGCT
GCA
GCAAATTGTCAAGTTTCCAAGGTCCCCTCCTCATCCTCTGTAGATTCAGTTCCAAGGGAAAATCATG
AA
TCGGAAAAGCCAGCACTGAACAACATAGCAGACAACACAGTAGCAATGGAGGTGACGTAG


Translation (813 aa):
MSKLSFRARALDASKPLPVFRCEDLPDLHEYASINRAVPQMPTGMEKEEESEHHLQRAISAQQVYGEKRD
N
MVIPVPEAESNIAYYESIYPGEFRMPKQLIHIQ
PFSLDAEQPDYDLDSEDEVFVNKLKKKMDICPLQFE
E
MIDRLEKGSGQQ
PVSLQEAKLLLKEDDELIREVYEYWIKKRKTCRGSSLIPLVKQEKRDGSSTNDPYVA
F
RRRTEKMQTRK
NRKNDEASYEKMLKLRRDLSRAVTILEMIKRREKSKRELLHLTLEIMEKRYNLGDYSG
E
IMSEVMAQRQPVKPTYAIPIIPITNSSQFKHQDATDSKEFKVNK
QDKADLIRPKRKYEKKPKVLPPSAA
A
PQQQSPAALPGFSAKDLNQYDFPSSDEEPLSQ
VLSGSSEAEEENDPDGPFAFRRKAGCQYYAPHLDQTG
N
WPWTSPKDGGLGDVRYRYCLTTLTVPQRCLGFARRRVGRGG
RVVLDRAHSDYDSMFHHLDLDMLSSPQP
S
PVNQFANTSEPNTSDRSSSKDLSQILVDIKSCRWRHFRPRTPSLPDSDSGELSSRKLHRSISRAGAAQP
G
AHTCSTSTQNRSSSGSAHC
AFTAEQYQQHQQQLALMQQQQLAQTQQQQQANSSSSAAAQQGFVSKTLDS
A
SAQFAASALMTSEQLLGFKVKDDVVLGLGVNGVLPAS
GVYKGLHLSSTTPTALVHTSPSTAGSTLLQPS
N
ITQTSGSHSSLSHQVTAASSATTQVLFGNNIRLTVPSSVPTVNSVTPINARHIPRTLSAVPPSALKLAA
A
ANCQVSKVPSSSSVDSVP
RENHESEKPALNNIADNTVAMEVT



Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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