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Report for CCDS30295.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
30295.1 |
Public |
Mus musculus |
X |
Ophn1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:94190](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:30295.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:94190](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome X in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 30295.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000033560.8 |
ENSMUSP00000033560.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000033560.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000033560.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000033560](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000033560](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000113826.7 |
ENSMUSP00000109457.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000113826.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000109457.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000113826](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000109457](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001313754.1 |
NP_001300683.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001313754.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001300683.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001313754](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001300683](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001300683.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_052976.4 |
NP_443208.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_052976.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_443208.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_052976](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_443208](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_443208.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 30295.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2409 nt): ATGGGGCATCCCCCGCTGGAGTTCAGCGACTGCTACCTCGACAGCCCCGATTTCCGCCAGAGGCTCAAGT ATTATGAAGAGGAGCTGGAGAGGACCAATAAATTCATCAAAGACGTGATCAAAGACGGCAGCGCGCTTAT CAGCGCTATGAGAAATTACTCTTCTGCGGTTCAGAAATTTTCTCAGACACTCCAGTCATTTCAATTTGAT TTCATTGGAGACACGCTGACCGATGATGAGATTAATATAGCGGAATCATTCAAGGAATTTGCTGAATTGC TCAATGAAGTAGAAAATGAAAGGATGATGATGGTACAAAATGCTAGTGACTTGCTGATCAAACCCCTGGA AACTTTTCGGAAGGAACAAATAGGTTTTACAAAGGAAAGGAAGAAGAAATTTGAAAAGGATGGTGAGAGG TTTTACTCGCTACTGGACCGCCACTTACATCTGTCATCCAAAAAGAAAGAATCTCAGCTACTAGAGGCAG ACCTCCAAGTGGATAAGGAAAGGCACAATTTCTTTGAATCATCTCTTGACTATGTTTATCAAATTCAGGA AGTCCAGGAGTCAAAGAAGTTCAATATTGTGGAGCCGGTCTTGGCCTTCCTTCATAGCCTCTTCATTTCT AACAGCTTGACTGTGGAGCTCACACAGGATTTCCTGCCATACAAACAACAGCTGCAGCTCAGCTTACAGA ATACAAGAAATCATTTCTCCAGTACCCGGGAGGAGATGGAAGAACTTAAGAAAAGGATGAAAGAAGCCCC TCAGACATGCAAACTTCCAGGACAGCCAACCATTGAAGGCTATCTCTACACACAGGAGAAATGGGCCCTG GGGATATCCTGGGCGAAATACTATTGTCGGTATGAGAAAGAGACCAGGATGCTCACAATGATACCAATGG AACAGAAGCCAGGTGCTAAGCAGGGACCGGTGGACTTAACTTTGAAGTACTGCGTGAGAAGGAAGACAGA GTCAATTGACAAGAGATTCTGTTTTGATATAGAAACTAATGAAAGACCTGGAACCATCACTCTGCAGGCG CCTTCCGAAGCCAATAGAAGGCTATGGATGGAAGCCATGGATGGCAAAGAACCTATCTACCACACTCCTA TAACAAAACAGGAAGAAATGGAGCTGAATGAAGTGGGGTTCAAATTTGTTAGGAAGTGCATCAATTTTAT TGAGACCAAAGGGATCAAGACAGAAGGGCTGTACCGCACCGTGGGCAGCAACATCCAGGTTCAGAAGCTG CTCTATGCCTTTTTTGATCCAAAATGTCCAGGGGATGTTGATTTCCATAACAGTGACTGGGACATTAAGA CAATCACAAGCTCTTTAAAATTCTACCTCAGGAATCTCTCAGAACCTGTCATGACTTATAAGCTCCATAA AGAACTCGTCTCTGCTGCCAAATCTGACAACCTGGATTACCGTCTGGGGGCTATTCACTCCCTAGTATAT AAGCTACCAGAAAAGAACCGGGAGATGCTGGAACTTCTAATCAAACACTTGGTAAATGTGTGTGAGCACA GCAAAGAGAATCTTATGACACCTTCCAATATGGGGGTGATCTTTGGGCCCACCCTGATGAGAGCTCAAGA GGACACTGTGGCTGCTATGATGAACATCAAATTCCAGAACATTGTGGTAGAAATCCTGATTGAACACTTT GGCAAGATTTATTTAGGTCCACCCGAAGATAGCCAAGTACCTCCAGTGCCTCCACCTCGAGTGACAGCAA GAAGACACAAACCAATCACAATCTCAAAGCGCTTGCTGAGAGAAAAGACTGTGTTCTATACTTCTTCCCT GGATGAAAATAAAGATGAAAGTCACCATCAAACTCCTAATGGTACAATCACTAGCAACCTGGATCCCCCC AAGCTACTGCAGCACCTCAAACCACCCATGCAAAAAAGTGGGGAAACTGACCCTGGAAGAAAGTCCCCAA GCAGACCTGTTTCTGACTGTCAATCGGAGCCCTGCCTAGAGACGGATGTGGGGAGGTTGTTATTTAGGTT GCAGGATGGAGGGACCAAGGCTACTCCAAAGGCTTCCAATGGACCTGTTCCAGGCTCTGGACACACAAAG ACCTCCTCTTTCCATATAAGGAGACCAGCTCCCAGGCCAATGGCTCACCACAAGGAAGGCGATACTGACG GTTTCAGCAAAGTCCGGCCCCCAGGAGAAAAGCAAACAATCATCCGTCCTCCGGTGAGGCCCCCAGACCC TCCTTGCCGGTCCATCACTCCACAAAAGCCAGAGCCAAAGCCAGAAACAGGGTCTGGCAATGCAGACGAA ATCCCATCATCCGTGGTGGCATCTAGGACCAGATTCTTTGAAACAGCTTCCCGGAAAACTGGAAGTTCTC AAGGAAAACTTCCTGGAGATGAGAGTTGA
Translation (802 aa): MGHPPLEFSDCYLDSPDFRQRLKYYEEELERTNKFIKDVIKDGSALISAMRNYSSAVQKFSQTLQSFQFD FIGDTLTDDEINIAESFKEFAELLNEVENERMMMVQNASDLLIKPLETFRKEQIGFTKERKKKFEKDGER FYSLLDRHLHLSSKKKESQLLEADLQVDKERHNFFESSLDYVYQIQEVQESKKFNIVEPVLAFLHSLFIS NSLTVELTQDFLPYKQQLQLSLQNTRNHFSSTREEMEELKKRMKEAPQTCKLPGQPTIEGYLYTQEKWAL GISWAKYYCRYEKETRMLTMIPMEQKPGAKQGPVDLTLKYCVRRKTESIDKRFCFDIETNERPGTITLQA PSEANRRLWMEAMDGKEPIYHTPITKQEEMELNEVGFKFVRKCINFIETKGIKTEGLYRTVGSNIQVQKL LYAFFDPKCPGDVDFHNSDWDIKTITSSLKFYLRNLSEPVMTYKLHKELVSAAKSDNLDYRLGAIHSLVY KLPEKNREMLELLIKHLVNVCEHSKENLMTPSNMGVIFGPTLMRAQEDTVAAMMNIKFQNIVVEILIEHF GKIYLGPPEDSQVPPVPPPRVTARRHKPITISKRLLREKTVFYTSSLDENKDESHHQTPNGTITSNLDPP KLLQHLKPPMQKSGETDPGRKSPSRPVSDCQSEPCLETDVGRLLFRLQDGGTKATPKASNGPVPGSGHTK TSSFHIRRPAPRPMAHHKEGDTDGFSKVRPPGEKQTIIRPPVRPPDPPCRSITPQKPEPKPETGSGNADE IPSSVVASRTRFFETASRKTGSSQGKLPGDES
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