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Report for CCDS19761.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19761.1 Public Mus musculus 5 Serpine1 23 108 98 CCDS HistoryNCBI Gene:18787Re-query CCDS DB by CCDS ID:19761.1Re-query CCDS DB by GeneID:18787See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19761.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041388.10 ENSMUSP00000039586.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041388.10Link to Ensembl Protein Viewer:ENSMUSP00000039586.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000041388Re-query CCDS DB by Protein ID:ENSMUSP00000039586
Original member Current member EBI ENSMUST00000077523.3 ENSMUSP00000076728.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077523.3Link to Ensembl Protein Viewer:ENSMUSP00000076728.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000077523Re-query CCDS DB by Protein ID:ENSMUSP00000076728
Original member Current member NCBI NM_008871.2 NP_032897.2 Accepted alive Link to Nucleotide Sequence:NM_008871.2Link to Protein Sequence:NP_032897.2Re-query CCDS DB by Nucleotide ID:NM_008871Re-query CCDS DB by Protein ID:NP_032897Link to BLAST:NP_032897.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032897.2 402 P22777 402 99.5025% 0 2

Chromosomal Locations for CCDS 19761.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137063174 137063211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137063481 137063564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137064347 137064433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137064861 137064961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137066827 137067025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137067726 137067920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137069313 137069546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137071033 137071303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGCAGATGTCTTCAGCCCTTGCTTGCCTCATCCTGGGCCTGGTTCTGGTCTCTGGGAAAGGGTTCACTT
TA
CCCCTCCGAGAATCCCACACAGCCCATCAGGCCACCGACTTCGGAGTAAAAGTGTTTCAGCAGGTGGT
C
CAGGCCTCCAAAGACCGGAATGTGGTCTTCTCTCCCTATGGCGTGTCCTCGGTGCTGGCTATGCTGCAG
ATG
ACCACAGCGGGGAAAACCCGGCGGCAGATCCAAGATGCTATGGGATTCAAAGTCAATGAGAAGGGCA
CA
GCTCATGCCCTCCGCCAGCTCTCCAAGGAGCTCATGGGGCCGTGGAACAAGAATGAGATCAGTACTGC
G
GATGCCATCTTTGTCCAGCGGGACCTAGAGCTGGTCCAGGGCTTCATGCCCCACTTCTTCAAGCTCTTC
CAG
ACTATGGTGAAACAGGTGGACTTCTCAGAAGTGGAAAGAGCCAGATTTATCATCAATGACTGGGTGG
AA
AGGCATACCAAAGGTATGATCAGTGACTTACTGGCCAAGGGGGCTGTAGACGAGCTGACACGCCTGGT
G
CTGGTGAATGCCCTCTACTTCAGTGGCCAATGGAAGACTCCTTTCTTAGAGGCCAGCACCCACCAGCGC
CTC
TTCCACAAGTCTGATGGCAGCACCGTCTCTGTGCCCATGATGGCTCAGAGCAACAAGTTCAACTACA
CT
GAGTTCACCACCCCCGATGGGCTCGAGTATGACGTTGTGGAACTGCCCTACCAGGGCGACACCCTCAG
C
ATGTTCATCGCTGCACCCTTTGAGAAAGATGTGCACCTCTCCGCCCTCACCAACATCTTGGATGCTGAA
CTC
ATCAGACAATGGAAGGGCAACATGACCAGGCTGCCCCGCCTCCTCATCCTGCCTAAGTTCTCTCTGG
AG
ACTGAAGTGGACCTCAGAGGGCCCCTGGAGAAGTTGGGCATGCCTGACATGTTTAGTGCAACCCTGGC
C
GACTTCACAAGTCTTTCCGACCAAGAGCAGCTCTCTGTAGCACAGGCACTGCAAAAGGTCAGGATCGAG
GTA
AACGAGAGCGGCACAGTGGCGTCTTCCTCCACAGCCTTTGTCATCTCAGCCCGCATGGCCCCCACGG
AG
ATGGTTATAGACCGATCCTTTCTCTTTGTGGTTCGGCACAACCCGACAGAGACAATCCTCTTCATGGG
C
CAAGTGATGGAGCCTTGA


Translation (402 aa):
MQMSSALACLILGLVLVSGKGFTLPLRESHTAHQATDFGVKVFQQVVQASKDRNVVFSPYGVSSVLAMLQ
M
TTAGKTRRQIQDAMGFKVN
EKGTAHALRQLSKELMGPWNKNEISTADAIFVQRDLELVQGFMPHFFKLF
Q
TMVKQVDFSEVERARFIINDWVERHTK
GMISDLLAKGAVDELTRLVLVNALYFSGQWKTPFLEASTHQR
L
FHKSDGSTVSVPMMAQSNKFNY
TEFTTPDGLEYDVVELPYQGDTLSMFIAAPFEKDVHLSALTNILDAE
L
IRQWKGNMTRLPRLLILP
KFSLETEVDLRGPLEKLGMPDMFSATLADFTSLSDQEQLSVAQALQKVRIE
V
NESGTVASSST
AFVISARMAPTEMVIDRSFLFVVRHNPTETILFMGQVMEP



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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