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Report for CCDS26565.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
26565.1 |
Public |
Mus musculus |
13 |
Smad5 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:17129](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:26565.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:17129](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 13 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 26565.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000069557.13 |
ENSMUSP00000065798.7 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000069557.13](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000065798.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000069557](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000065798](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000109874.1 |
ENSMUSP00000105500.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000109874.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000105500.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000109874](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000105500](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000109876.7 |
ENSMUSP00000105502.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000109876.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000105502.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000109876](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000105502](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001164041.1 |
NP_001157513.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001164041.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001157513.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001164041](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001157513](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001157513.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001164042.1 |
NP_001157514.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001164042.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001157514.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001164042](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001157514](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001157514.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_008541.3 |
NP_032567.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_008541.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_032567.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_008541](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_032567](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_032567.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 26565.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1398 nt): ATGACGTCAATGGCCAGCTTGTTTTCTTTCACTAGTCCAGCCGTGAAGCGATTGTTGGGCTGGAAACAAG GTGACGAGGAAGAGAAATGGGCAGAAAAGGCAGTGGATGCTTTAGTGAAAAAGCTGAAGAAGAAGAAGGG TGCTATGGAGGAGCTGGAGAAAGCCTTGAGCAGCCCAGGACAGCCAAGCAAGTGTGTCACGATCCCCAGG TCCTTGGATGGACGTCTGCAAGTTTCTCACAGGAAAGGCTTGCCCCATGTTATATATTGCCGTGTTTGGC GCTGGCCAGATTTGCAGAGCCATCACGAGCTAAAACCATTGGATATTTGTGAATTTCCTTTTGGATCTAA GCAAAAGGAAGTTTGTATCAATCCATACCACTATAAGAGAGTGGAGAGTCCAGTCTTACCTCCAGTATTA GTGCCTCGTCACAATGAATTCAATCCACAACACAGCCTTCTGGTTCAGTTCAGGAACCTGAGCCACAATG AACCGCACATGCCACAAAACGCCACGTTTCCCGATTCTTTCCACCAACCCAACAACGCTCCTTTCCCCTT ATCTCCTAACAGCCCCTATCCTCCTTCCCCTGCTAGCAGCACATATCCCAACTCCCCAGCAAGCTCTGGA CCTGGAAGTCCATTTCAACTCCCAGCTGACACCCCTCCCCCTGCCTATATGCCACCTGATGATCAGATGG CCCCAGATAATTCCCAGCCTATGGATACAAGCAGTAACATGATTCCTCAGACCATGCCCAGCATATCCAG CAGAGATGTTCAGCCTGTCGCCTATGAGGAGCCCAAACACTGGTGTTCGATTGTCTACTATGAATTAAAC AATCGTGTTGGGGAAGCTTTTCATGCATCTTCTACTAGTGTGTTAGTAGATGGATTTACAGATCCTTCAA ATAACAAAAGTAGATTCTGCCTGGGATTGTTGTCAAATGTTAATCGTAATTCAACTATTGAAAACACTAG GCGGCATATTGGAAAAGGTGTTCATCTATACTACGTTGGTGGGGAGGTGTACGCTGAGTGTCTTAGTGAC AGCAGCATCTTTGTTCAGAGTAGGAACTGCAACTTTCACCATGGCTTCCATCCCACCACCGTCTGTAAGA TCCCCAGCAGCTGCAGCCTCAAGATTTTTAACAATCAGGAGTTTGCTCAGCTTCTGGCTCAGTCAGTCAA CCATGGATTCGAGGCTGTGTATGAGCTCACCAAGATGTGTACCATTCGAATGAGCTTTGTCAAGGGCTGG GGAGCAGAGTACCACCGACAGGACGTCACCAGTACTCCCTGCTGGATTGAGATTCACCTCCACGGGCCTC TGCAGTGGCTGGATAAAGTCCTTACTCAGATGGGCTCTCCGCTGAACCCCATTTCTTCTGTTTCATAG
Translation (465 aa): MTSMASLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSSPGQPSKCVTIPR SLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLDICEFPFGSKQKEVCINPYHYKRVESPVLPPVL VPRHNEFNPQHSLLVQFRNLSHNEPHMPQNATFPDSFHQPNNAPFPLSPNSPYPPSPASSTYPNSPASSG PGSPFQLPADTPPPAYMPPDDQMAPDNSQPMDTSSNMIPQTMPSISSRDVQPVAYEEPKHWCSIVYYELN NRVGEAFHASSTSVLVDGFTDPSNNKSRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSD SSIFVQSRNCNFHHGFHPTTVCKIPSSCSLKIFNNQEFAQLLAQSVNHGFEAVYELTKMCTIRMSFVKGW GAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPLNPISSVS
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