NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16180.1 Public Mus musculus 2 Zc3h15 23 108 98 CCDS HistoryNCBI Gene:69082Re-query CCDS DB by CCDS ID:16180.1Re-query CCDS DB by GeneID:69082See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16180.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081591.6 ENSMUSP00000080301.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081591.6Link to Ensembl Protein Viewer:ENSMUSP00000080301.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000081591Re-query CCDS DB by Protein ID:ENSMUSP00000080301
Original member Current member NCBI NM_026934.3 NP_081210.2 Accepted alive Link to Nucleotide Sequence:NM_026934.3Link to Protein Sequence:NP_081210.2Re-query CCDS DB by Nucleotide ID:NM_026934Re-query CCDS DB by Protein ID:NP_081210Link to BLAST:NP_081210.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081210.2 426 Q3TIV5-1 426 100% 0 0

Chromosomal Locations for CCDS 16180.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 83644653 83644727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83653358 83653459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83657016 83657127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83658009 83658161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83658530 83658621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83660058 83660240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83661147 83661293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83661433 83661534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83662149 83662272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83663820 83664010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGCCCCCCAAGAAACAGGCTCAGGCCGGGGGCAGCAAGAAGGCGGAGCAGAAGAAGAAGGAGAAGATCA
TC
GAGGACAAAACTTTTGGACTGAAGAATAAGAAAGGAGCAAAGCAACAGAAATTTATTAAGGCTGTCAC
T
CATCAAGTGAAATTTGGTCAACAGAATCCACGTCAGGTAGCGCAAAGTGAAGCTGAAAAGAAATTGAAG
AAA
GATGACAAGAAGAAAGAACTACAAGAGCTAAATGAGTTGTTCAAACCTGTAGTTGCTGCACAAAAAA
TA
AGCAAAGGTGCAGATCCCAAATCTGTGGTGTGCGCATTCTTCAAACAGGGACAGTGTACTAAAGGAGA
T
AAATGTAAGTTCTCTCATGACCTCACTTTGGAGAGAAAATGTGAAAAACGAAGTGTTTACATTGATGCA
AGA
GATGAAGAACTTGAAAAAGATACTATGGATAATTGGGATGAGAAAAAGCTGGAAGAAGTAGTAAACA
AG
AAGCACGGTGAGGCGGAAAAGAAAAAACCAAAAACTCAAATAGTGTGCAGACATTTTCTTGAAGCTAT
T
GAAAATAACAAGTATGGCTGGTTTTGGGTGTGTCCTGGAGGTGGGGACAACTGCATGTATCGCCATGCA
CTT
CCTCCTGGATTTGTGCTAAAGAAAGACAAAAAGAAAGAAGAGAAGGAAGATGAAATCTCATTAGAAG
AT
CTAATTGAAAGAGAGCGTTCTGCCCTAGGTCCAAATGTTACCAAAATCACTCTAGAGTCTTTTCTCGC
G
TGGAAGAAGAGGAAAAGACAAGAAAAGATTGATAAACTTGAACAAGATATGGAGAGGCGGAAAGCTGAC
TTC
AAAGCAGGGAAAGCACTGGTGATCAGTGGTCGTGAGGTATTTGAATTTCGTCCCGAGCTGGTCAATG
AT
GATGACGAGGAAGCAGACGATACCCGTTACATTCAGGGAACAGGTGGTGATGAGGTTGATGATTCTAT
G
GGTGTAAATGACATAGATATAAGCCTGTACGTCCCAAGAGATGTAGAAGAGACAGGTATCACTGTGGCC
AGT
GTTGAAAGATTCAGCACCTATGCGCCAGACAAAGACGAGAACAAATTAAGTGAAGCTTCTGGGGGTC
TG
GCTGAAAATGGTGAAAGAAGTGATTTGGACGAGGACAGCGGAGGGGGAGGACAGGAAAATGGATCCAT
C
GATGCTGTTCCTGTTGATGAAAACCTGTTCACTGGCGAAGATCTGGATGAACTAGAAGAGGAATTGAAC
ACT
CTTGACTTAGAAGAATGA


Translation (426 aa):
MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQVAQSEAEKKLK
K
DDKKKELQELNELFKPVVAAQKISK
GADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDA
R
DEELEK
DTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCRHFLEAIENNKYGWFWVCPGGGDNCMYRHA
L
PPGFVLKKDKKKEEKEDEISLEDLIERE
RSALGPNVTKITLESFLAWKKRKRQEKIDKLEQDMERRKAD
F
KAGKALV
ISGREVFEFRPELVNDDDEEADDTRYIQGTGGDEVDDSMGVNDIDISLYVPRDVEETGITVA
S
VERFSTYAPDKD
ENKLSEASGGLAENGERSDLDEDSGGGGQENGSIDAVPVDENLFTGEDLDELEEELN
T
LDLEE




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser