CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS17289.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
17289.2 |
Public |
Mus musculus |
3 |
Prkci |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:18759](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:17289.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:18759](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 3 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 17289.2 |
The coding region has been updated to extend the N-terminus based on the presence of an upstream translation start codon, which is supported by available transcript and conservation data. |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 17289.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000108249.8 |
ENSMUSP00000103884.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000108249.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000103884.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000108249](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000103884](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_008857.3 |
NP_032883.2 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_008857.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_032883.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_008857](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_032883](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_008857.4 |
NP_032883.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_008857.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_032883.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_008857](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_032883](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_032883.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_032883.2 |
595 |
Q62074 |
595 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 17289.2
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1788 nt): ATGCCGACCCAGAGGGACAGCAGCACCATGTCCCACACGGTCGCGTGCGGCGGCGGCGGGGACCATTCCC ACCAGGTCCGGGTGAAAGCCTACTACCGCGGGGATATTATGATAACACACTTTGAGCCTTCCATCTCCTT TGAGGGACTTTGCAGTGAGGTTCGAGATATGTGTTCTTTTGACAATGAGCAGCCGTTCACCATGAAATGG ATAGATGAGGAAGGAGACCCATGTACAGTGTCTTCTCAGTTGGAGTTAGAAGAGGCTTTCAGGCTGTACG AGCTGAACAAGGATTCTGAACTCTTGATTCATGTATTTCCATGTGTACCAGAGCGTCCTGGAATGCCTTG CCCAGGGGAAGACAAGTCCATTTACCGGAGAGGGGCACGCCGGTGGAGAAAGCTGTATTGTGCAAATGGC CACACTTTTCAAGCCAAACGTTTCAATAGGCGCGCCCACTGTGCCATCTGCACAGACAGAATCTGGGGCC TCGGACGACAAGGATACAAGTGCATCAACTGCAAACTGCTGGTTCATAAGAAGTGCCACAAGCTGGTCAC AATTGAGTGTGGGCGGCACTCTTTGCCACCGGAACCCATGATGCCAATGGACCAGACCATGCATCCAGAC CACACACAGACAGTAATTCCATATAATCCTTCAAGTCATGAGAGTTTGGACCAAGTTGGTGAAGAAAAGG AGGCAATGAACACCAGGGAGAGTGGTAAAGCGTCGTCCAGTCTAGGTCTGCAGGATTTCGATTTGCTTCG AGTTATAGGGAGGGGAAGTTACGCCAAAGTACTGTTGGTTCGGTTAAAGAAAACAGATCGCATTTATGCA ATGAAAGTTGTGAAGAAAGAGCTCGTCAATGACGATGAGGATATCGATTGGGTGCAGACAGAGAAGCATG TGTTTGAGCAGGCGTCCAATCACCCTTTTCTTGTCGGGCTGCATTCTTGCTTCCAGACAGAAAGCAGGTT GTTTTTTGTCATAGAATATGTAAATGGAGGGGACCTCATGTTTCATATGCAGCGACAGAGAAAACTTCCT GAAGAGCATGCCAGGTTTTACTCTGCAGAAATCAGTCTAGCACTGAATTATCTTCATGAGCGAGGGATAA TTTATAGAGATTTGAAGTTGGACAATGTACTGCTAGACTCTGAAGGACACATTAAACTCACTGACTACGG CATGTGTAAGGAAGGATTGCGGCCTGGAGACACAACCAGCACTTTCTGCGGCACTCCCAATTACATTGCT CCAGAGATCTTAAGAGGAGAAGATTATGGCTTCAGCGTTGACTGGTGGGCTCTTGGAGTGCTTATGTTTG AGATGATGGCGGGAAGGTCTCCGTTTGATATCGTTGGGAGCTCTGACAATCCTGACCAAAACACAGAGGA TTATCTATTCCAAGTCATTTTGGAAAAGCAGATCCGCATCCCGCGTTCTCTGTCTGTAAAAGCAGCAAGT GTACTGAAGAGTTTTCTCAACAAGGACCCAAAGGAACGATTGGGTTGTCACCCTCAAACTGGATTTGCTG ACATTCAAGGACATCCATTCTTCAGAAATGTGGACTGGGACATGATGGAGCAAAAGCAGGTGGTTCCACC CTTTAAACCAAACATTTCTGGAGAATTTGGTTTGGATAATTTCGATTCTCAGTTTACTAATGAACCAGTC CAGCTCACTCCAGATGATGATGACATTGTGAGGAAGATTGATCAGTCTGAATTTGAAGGTTTTGAGTATA TCAACCCCCTCTTGATGTCTGCAGAAGAGTGTGTCTGA
Translation (595 aa): MPTQRDSSTMSHTVACGGGGDHSHQVRVKAYYRGDIMITHFEPSISFEGLCSEVRDMCSFDNEQPFTMKW IDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHVFPCVPERPGMPCPGEDKSIYRRGARRWRKLYCANG HTFQAKRFNRRAHCAICTDRIWGLGRQGYKCINCKLLVHKKCHKLVTIECGRHSLPPEPMMPMDQTMHPD HTQTVIPYNPSSHESLDQVGEEKEAMNTRESGKASSSLGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYA MKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLP EEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIA PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAAS VLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISGEFGLDNFDSQFTNEPV QLTPDDDDIVRKIDQSEFEGFEYINPLLMSAEECV
|