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Report for CCDS48361.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
48361.1 |
Public |
Mus musculus |
1 |
Plekha6 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:240753](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:48361.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:240753](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 1 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 48361.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000105082.8 |
ENSMUSP00000100703.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000105082.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000100703.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000105082](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000100703](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000186917.6 |
ENSMUSP00000139794.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000186917.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000139794.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000186917](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000139794](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001160268.1 |
NP_001153740.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001160268.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001153740.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001160268](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001153740](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001153740.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 48361.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3210 nt): ATGTCCAACAAAACAGGTGGGAAACGTTCTGCTACCATCAACAGCGACATAGCCAACCACAACATGGTGT CTGAGGTTCCTCCAGAGCGGCCCAACATCCGGGCGACTCGAACTTCCCGAAAAGCCATTGCCTTTGGTAA ACGCGCACACTCCATGAAGCGGAACCCCAATGCACCTGTTACCAAGGCGGGCTGGCTCTATAAGCAGGCC AGCTCCGGGGTGAAGCAGTGGAATAAGCGTTGGTTTGTCCTGGTGGATCGCTGCCTCTTTTACTACAAAG ATGAGAAGCAGGAGAGCATCCTGGGCAGCATCCCCCTGCTGAGCTTCCGGGTGGCGGCTGTGCAGCCTTC AGACAACATCAGTCGGAAGCACACGTTTAAGGTGACTGTTCACTGGGTAGATGAGGCTGGGGCCAGTTCT ACGCACTGCCTCTCCCCACAGGCAGAGCACGCTGGAGTCCGCACCTACTTCTTCAGTGCCGAGAGCCCCG AGGAGCAGGAGGCCTGGATCCAGGCCATGGGCGAGGCTGCTCGGGTCCAGATCCCTCCAGCCCAGAAGTC AGTGCCTCAGCCTGTGCGTCACAGCCTCGAGAAGCCAGACTCAGAGAACATCCCACCCAGCAAACACCAT CAGCAGCCACCTCACAACAATCTCACCAAGCTGGAGCCTGAGGCCAAGACTCGAGGGGAGGGCGACGGCA GGGGCTGTGAGAAGGCCGAGCGCAGGCCTGAGAGGCCTGAAGTCAAGAAAGAGACTTTGGTAAAAGCCAA TGGCCTCCCGTCTGGACCTGAGACAGCCTCAGAGCCTGGCAGCCCTTACCCCGATGGCCCGAGGGTTCCA GGAGGTGGGGAACACCCTGCTCAGCCCAATGGCTGGCAGTATAGCTCCCCAAGCCGACCAGGGAGCACAG CTTTTCCACCTCATGATGGGGACTCTGGGGGACAGCGGCGGAGCTTTCCACCACGTACTGACCCTGACAA AATTGCCCAGCGCAAAAGCTCTATGAACCAGCTTCAGCAGTGGGTGAACCTGCGCCGAGGGGTGCCCCCA CCCGAAGACCTTCGGAGCCCTTCAAGGTTCTACCCTATGCCCCGCCGGGTCCCTGACTATTACAATCCCT ACTCCTCCCAGTATCCTGATGATTACCAGTACTACCCACCAGGGGTGCGGCCCGACAGCATCTGCTCCAT GCCAGCCTACGATAGGATTAGTCCACCCTGGGCCCTGGAGGACAAGCGCCACTCCTTCCGGAATGGGGGT GGACCCACTTACCAGCTTCATGAGTGGAAGGAGTCTACCAGCTACGGGCGGCAGGATGGCACCGTTTGGA TCCCCAGCCCCTCCCGACAGCCAGTCTTTTATGACGAGCTGGATGCCGCCTCTGGCTCCTTGCGCCGCCT GTCCTTGCAGCCCCGGTCCCACTCTGTGCCCCGCTCGCCCAGCCAGGGCTCCTACAGCCGTGCCCGCATC TACTCCCCAGTGCGCTCACCTAGCGCCCGTTTTGATCGGCTGCCACCACGCAGTGAGGACATCTATGCAG ATCCCGCTGCCTACGTGATGAGGCGATCTATCAGCTCCCCAAAGGTCCCTGCATACCCAGAGGTGTTCCG GGATGGCCTCCACACCTTCAAGCTAAACGAGCAAGACACGGATAAGCTGCTGGGCAAGCTGTGTGAGCAG AACAAGGTAGTAAGGGAACAGGAGCGGCTGGTGCAGCAGCTGCGGGCAGAGAAGGAGAGCCTAGAAAGTG CCTTGATGGGAACCCACCAGGAGCTGGAGATGTTTGGGAGCCAGCCCGCCTACCCAGAGAAGCTGCTGCA CAAGAAGGAGTCTCTGCAGAACCAACTTATCAACATCCGGGTGGAGCTGTCACAGGCGACCACGGCACTG ACCAACAGTACAGTGGTGTATGAGAACCTCGAATCGGAGGTCTCTGCCCTGCATGACGAACTCTGGGAGC AGCTCAACTTGGATATCCAGAATGAGGTGCTCAATCGGCAAATCCAAAAGGAGATCTGGAGGATCCAGGA TGTGATGGAAGGGCTGAGGAAGAACAACCCCTCTCGGGGCACTGACACAGCCAAGCACAGAGGAGGACTT GGACCGTCAGCCACCTACAGCTCCAACAGCCCAGCCAGCCCTCTCAGCTCTGCCAGCCTTACCAGTCCCC TGAGCCCCTTTTCAATGGTGTCTGGCTCTCAGGGTTCTCCCACTAAGCCAGGGTCCAGTGAGCCCAAAAC AGGCTATGAGACAAGCAAGAAAGACCCGAGCCAGACATCACCCCTGGGTACCCCTAGAGATATCAACCTG GTACCCACCAGACAAGAGGTGGAGGCAGAGAAGCAGGCAGCTCTCAACAAAGTTGGCATTGTACCCCCTC GGACCAAATCTCCTGCTGAGGAGGAGTTGACACCATCAGCAGTGGTGAGAAGGACCACGAATGGACTCAC CAATGGCCTCTCCTCACGGCAAGAGCGCCCCAAGAGTGCTGTGTTCTCTGGAGAGGGCAAGGTGAAAATG AGTGTCGAGGAGCAGATGGACCGGATGAGGCGGCATCAGAGCGGTTCCATGAAGGAAAAGCGGAGGAGCC TACAGCTCCCAGCCAGCCCAGCCCCTGAGCCCAGCACCCGGCCTGCCTACAAAGTGGTGCGCCGTCACCG CAGCATCCATGAAGTAGACATCTCCAACCTGGAGGCAGCCCTGAGAGCCGAGGAACCTGGTGGTCAGGCA TATGAGACACCACGGGAGGAGATCGCGAGGCTCCGCAAGATGGAGCTGGAGCCTCAGCACTACGATGTGG ACATCAGTAAGGAGCTCTCTACTCCAGACAAAGTCCTCATCCCTGAACGGTACATTGACCTGGAACCTGA CACTCCCTTGAGCCCGGAGGAGTTGAAGGAGAAGCAGAAGAAGGTGGAGAGGATCAAGACGCTCATTGCC AAATCCAGTATGCAGAACGTGGTGCCCATCGGCGAGGGGGACTCTGTGGACGTGCCCCAGGACTCAGAGA GCCAGCTGCAGGAGCAGGAGAAGCGGATTGAAATCTCCTGTGCCCTGGCGACCGAGGCCTCCCGCAGGGG CCGCATGCTGTCTGTGCAGTGTGCCACCCCCAGCCCTCCCACCTCCCCTGCTTCCCCGACTCCACCAGTC AACCCCCTCTCGTCTGACCGCCCACGGGGCGCCGACAGCAGCCATACCATGCGGGTCTGA
Translation (1069 aa): MSNKTGGKRSATINSDIANHNMVSEVPPERPNIRATRTSRKAIAFGKRAHSMKRNPNAPVTKAGWLYKQA SSGVKQWNKRWFVLVDRCLFYYKDEKQESILGSIPLLSFRVAAVQPSDNISRKHTFKVTVHWVDEAGASS THCLSPQAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQIPPAQKSVPQPVRHSLEKPDSENIPPSKHH QQPPHNNLTKLEPEAKTRGEGDGRGCEKAERRPERPEVKKETLVKANGLPSGPETASEPGSPYPDGPRVP GGGEHPAQPNGWQYSSPSRPGSTAFPPHDGDSGGQRRSFPPRTDPDKIAQRKSSMNQLQQWVNLRRGVPP PEDLRSPSRFYPMPRRVPDYYNPYSSQYPDDYQYYPPGVRPDSICSMPAYDRISPPWALEDKRHSFRNGG GPTYQLHEWKESTSYGRQDGTVWIPSPSRQPVFYDELDAASGSLRRLSLQPRSHSVPRSPSQGSYSRARI YSPVRSPSARFDRLPPRSEDIYADPAAYVMRRSISSPKVPAYPEVFRDGLHTFKLNEQDTDKLLGKLCEQ NKVVREQERLVQQLRAEKESLESALMGTHQELEMFGSQPAYPEKLLHKKESLQNQLINIRVELSQATTAL TNSTVVYENLESEVSALHDELWEQLNLDIQNEVLNRQIQKEIWRIQDVMEGLRKNNPSRGTDTAKHRGGL GPSATYSSNSPASPLSSASLTSPLSPFSMVSGSQGSPTKPGSSEPKTGYETSKKDPSQTSPLGTPRDINL VPTRQEVEAEKQAALNKVGIVPPRTKSPAEEELTPSAVVRRTTNGLTNGLSSRQERPKSAVFSGEGKVKM SVEEQMDRMRRHQSGSMKEKRRSLQLPASPAPEPSTRPAYKVVRRHRSIHEVDISNLEAALRAEEPGGQA YETPREEIARLRKMELEPQHYDVDISKELSTPDKVLIPERYIDLEPDTPLSPEELKEKQKKVERIKTLIA KSSMQNVVPIGEGDSVDVPQDSESQLQEQEKRIEISCALATEASRRGRMLSVQCATPSPPTSPASPTPPV NPLSSDRPRGADSSHTMRV
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