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Report for CCDS28621.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
28621.1 |
Public |
Mus musculus |
17 |
Cyp4f14 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:64385](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:28621.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:64385](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 17 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana)
Attributes |
CDS uses downstream AUG |
Sequence IDs included in CCDS 28621.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000054174.8 |
ENSMUSP00000050478.6 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000054174.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000050478.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000054174](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000050478](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000179434.7 |
ENSMUSP00000136139.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000179434.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000136139.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000179434](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000136139](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000235058.1 |
ENSMUSP00000157006.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000235058.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000157006.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000235058](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000157006](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000234759.1 |
ENSMUSP00000157036.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000234759.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000157036.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000234759](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000157036](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001204333.1 |
NP_001191262.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001204333.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001191262.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001204333](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001191262](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001191262.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001204334.1 |
NP_001191263.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001204334.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001191263.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001204334](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001191263](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001191263.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001204335.1 |
NP_001191264.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001204335.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001191264.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001204335](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001191264](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001191264.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001204336.1 |
NP_001191265.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001204336.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001191265.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001204336](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001191265](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001191265.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001357788.1 |
NP_001344717.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001357788.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001344717.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001357788](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001344717](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001344717.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_022434.2 |
NP_071879.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_022434.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_071879.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_022434](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_071879](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_071879.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 28621.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1575 nt): ATGTCACAGCTGAGCCTGTCCTGGTTGGGACTGGGGCCCGAGGTGGCCTTCCCATGGAAGACCCTGCTAC TGCTTGGGGCCTCCTGGATCCTGGCCCGGATTCTGATCCAGATCTATGCTGCCTATAGGAACTATCGTCA CCTCCATGGCTTCCCTCAGCCCCCCAAACGGAACTGGCTTATGGGTCACGTGGGCATGGTAACTCCTACA GAGCAGGGCTTGAAGGAATTGACTCGTTTGGTGGGTACCTACCCCCAAGGTTTTTTGATGTGGATTGGAC CAATGGTCCCTGTTATTACTCTATGCCATTCTGACATCGTCCGATCTATCCTCAATGCCTCAGCCGCTGT TGCACTCAAGGATGTGATATTCTACAGCATCCTAAAGCCTTGGCTGGGGGATGGGCTCTTGGTGAGTGCT GGTGACAAGTGGAGCCGCCATCGTCGCATGCTGACACCCGCTTTCCATTTCAACATCCTGAAGCCCTATG TGAAGATTTTCAACGATAGCACCAACATCATGCACGCCAAGTGGCAACGGTTGATTTCAGATGGCAGTGC CCGTCTGGACATGTTTGAGCACGTCAGCCTGATGACTCTGGATAGTCTGCAGAAATGTGTCTTCAGCTTT GACAGCAACTGTCAGGAGAAGTCCAGTGAATATATTGCTGCCATCCTGGAGCTCAGTGCCCTAGTGGCCA AAAGGCACCAGCAGCCTTTGATGTTCATGGACCTGCTGTATAATCTCACCCCTGATGGTATGCGCTTCCG TAAGGCCTGCAACGTGGTGCATGAATTCACTGATGCTGTCATCCGGGAGCGGCACCGCACCCTCCCAGAT CAGGGTTTGGATGACTTCCTTAAGTCTAAGGCCAAGTCCAAGACTTTGGATTTCATTGATGTGCTGCTGC TGAGCAAGGATGAAGATGGAAAGGAGCTGTCAGATGAGGACATCCGAGCAGAGGCTGACACCTTCATGTT TGAGGGCCATGACACGACAGCCAGTGGACTCTCCTGGATCCTCTACAACCTGGCAAGGCACCCAGAATAC CAGGAGCGCTGCCGGCAGGAAGTTCAGGAGCTGCTGAGGGGCCGAGAGCCTGAGGAGATTGAATGGGACG ACCTGGCCCAGCTACCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGACTGCATCCCCCAGTCACGGT CATCTCCCGATGCTGCACCCAGGACATTCTGCTCCCAGATGGCCGGACCATTCCCAAAGGTATCATCTGT CTCATCAGCATCTTTGGAATTCATCACAACCCATCCGTGTGGCCAGACCCTGAGGTCTATGACCCCTTCC GCTTTGACCCTGAAAACATCAAAGACAGCTCACCTCTGGCATTTATTCCCTTCTCGGCGGGACCCAGGAA CTGCATAGGACAGACTTTCGCCATGAGTGAGATGAAGGTGGCACTGGCGCTGACGCTGCTGCGCTTCCGA CTCCTACCGGATGACAAGGAGCCGCGCAGGCAGCCAGAGCTGATCCTGCGCGCAGAGGGCGGGCTGTGGC TGCGGGTGGAGCCGCTGAGCGCGGGCGCTCATTGA
Translation (524 aa): MSQLSLSWLGLGPEVAFPWKTLLLLGASWILARILIQIYAAYRNYRHLHGFPQPPKRNWLMGHVGMVTPT EQGLKELTRLVGTYPQGFLMWIGPMVPVITLCHSDIVRSILNASAAVALKDVIFYSILKPWLGDGLLVSA GDKWSRHRRMLTPAFHFNILKPYVKIFNDSTNIMHAKWQRLISDGSARLDMFEHVSLMTLDSLQKCVFSF DSNCQEKSSEYIAAILELSALVAKRHQQPLMFMDLLYNLTPDGMRFRKACNVVHEFTDAVIRERHRTLPD QGLDDFLKSKAKSKTLDFIDVLLLSKDEDGKELSDEDIRAEADTFMFEGHDTTASGLSWILYNLARHPEY QERCRQEVQELLRGREPEEIEWDDLAQLPFLTMCIKESLRLHPPVTVISRCCTQDILLPDGRTIPKGIIC LISIFGIHHNPSVWPDPEVYDPFRFDPENIKDSSPLAFIPFSAGPRNCIGQTFAMSEMKVALALTLLRFR LLPDDKEPRRQPELILRAEGGLWLRVEPLSAGAH
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