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Report for CCDS29860.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
29860.1 |
Public |
Mus musculus |
19 |
Btrc |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:12234](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:29860.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:12234](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 19 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 29860.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000065601.12 |
ENSMUSP00000070728.5 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000065601.12](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000070728.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000065601](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000070728](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001037758.2 |
NP_001032847.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001037758.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001032847.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001037758](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001032847](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001032847.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001286465.1 |
NP_001273394.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001286465.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001273394.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001286465](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001273394](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001273394.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 29860.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1818 nt): ATGGACCCGGCAGAGGCGGTGCTGCAGGAGAAAGCGCTTAAGTTTATGTGCTCTATGCCCAGGTCTCTGT GGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGC ACTCACAGCTTTCCAGAATTCCTCAGAGAGAGAAGACTGTAATAATGGCGAACCCCCTAGGAAGATAATA CCAGAGAAGAATTCACTTAGACAGACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTAT GTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAAGCCAAACTTGCCAATGGCACTTCCAG CATGATTGTGCCCAAGCAGCGGAAACTCTCAGCAAGCTATGAGAAGGAAAAGGAGCTGTGTGTCAAGTAT TTTGAGCAGTGGTCAGAGTCTGATCAAGTGGAATTTGTAGAACACCTTATATCCCAAATGTGTCACTACC AGCATGGGCACATCAACTCCTACCTAAAACCTATGCTGCAGAGGGATTTCATAACTGCACTGCCAGCACG GGGTCTGGACCACATCGCTGAGAACATTCTGTCATACTTGGACGCCAAGTCACTGTGTGCTGCTGAGCTC GTGTGCAAGGAATGGTACCGCGTGACGTCGGACGGCATGCTGTGGAAAAAGCTCATCGAGAGGATGGTCA GGACGGACTCTCTGTGGCGAGGCCTGGCAGAGCGCAGAGGCTGGGGACAGTACTTATTCAAAAACAAACC TCCTGATGAGAACGCTCCTCCCAACTCCTTTTATAGAGCGCTTTATCCTAAAATCATACAAGACATTGAG ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTA AAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAGAT CTGGGATAAAAGCACACTGGAATGCAAGCGGATTCTCACGGGCCACACGGGCTCCGTCCTGTGTCTGCAG TACGATGAGAGGGTGATCATCACAGGCTCCTCAGACTCCACCGTCAGAGTGTGGGATGTAAATGCAGGTG AGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGT GACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGG GTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTG GAGATAGAACCATAAAGGTGTGGAACACAAGTACCTGTGAATTCGTAAGGACCCTAAATGGGCACAAGCG TGGCATCGCCTGTTTGCAGTACAGAGACAGGCTGGTGGTGAGCGGCTCCTCTGACAACACCATCAGGCTG TGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGAT TTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGGGAAAATTAAAGTGTGGGATCTTATGGCTGCTTT GGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTGGAGCATTCTGGAAGAGTTTTCCGC CTCCAGTTTGATGAATTCCAGATTGTCAGTAGTTCACATGATGACACAATTCTCATCTGGGACTTCCTGA ATGATCCAGCTGCTCACGCTGAACCGCCCCGCTCCCCTTCTCGGACATACACCTACATCTCCAGATAA
Translation (605 aa): MDPAEAVLQEKALKFMCSMPRSLWLGCSSLADSMPSLRCLYNPGTGALTAFQNSSEREDCNNGEPPRKII PEKNSLRQTYNSCARLCINQETVCLTSTAMKTENCVAKAKLANGTSSMIVPKQRKLSASYEKEKELCVKY FEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAEL VCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDENAPPNSFYRALYPKIIQDIE TIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCLQ YDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRL WDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAGTLCLRTLVEHSGRVFR LQFDEFQIVSSSHDDTILIWDFLNDPAAHAEPPRSPSRTYTYISR
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