CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS5510.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
5510.1 |
Public |
Homo sapiens |
7 |
FIGNL1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:63979](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:5510.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:63979](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 5510.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000356889.8 |
ENSP00000349356.4 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000356889.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000349356.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000356889](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000349356](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000395556.6 |
ENSP00000378924.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000395556.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000378924.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000395556](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000378924](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000433017.6 |
ENSP00000399997.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000433017.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000399997.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000433017](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000399997](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000419119.1 |
ENSP00000410811.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000419119.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000410811.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000419119](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000410811](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000613602.3 |
ENSP00000481751.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000613602.3](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000481751.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000613602](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000481751](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000617389.4 |
ENSP00000483126.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000617389.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000483126.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000617389](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000483126](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000615084.4 |
ENSP00000483543.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000615084.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000483543.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000615084](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000483543](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000611938.4 |
ENSP00000484551.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000611938.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000484551.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000611938](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000484551](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001042762.5 |
NP_001036227.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001042762.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001036227.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001042762](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001036227](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001036227.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001287492.4 |
NP_001274421.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001287492.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001274421.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001287492](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001274421](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001274421.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001287493.3 |
NP_001274422.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001287493.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001274422.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001287493](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001274422](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001274422.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001287494.4 |
NP_001274423.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001287494.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001274423.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001287494](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001274423](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001274423.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001287495.3 |
NP_001274424.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001287495.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001274424.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001287495](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001274424](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001274424.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346560.3 |
NP_001333489.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346560.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333489.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346560](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333489](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333489.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346561.3 |
NP_001333490.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346561.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333490.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346561](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333490](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333490.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346562.3 |
NP_001333491.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346562.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333491.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346562](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333491](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333491.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346563.3 |
NP_001333492.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346563.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333492.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346563](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333492](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333492.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346564.3 |
NP_001333493.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346564.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333493.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346564](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333493](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333493.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346565.3 |
NP_001333494.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346565.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333494.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346565](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333494](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333494.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_022116.7 |
NP_071399.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_022116.7](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_071399.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_022116](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_071399](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_071399.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 5510.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2025 nt): ATGCAGACCTCCAGCTCTAGATCTGTGCACCTGAGTGAATGGCAGAAGAATTACTTCGCAATTACATCTG GCATATGTACCGGACCGAAGGCAGATGCATACCGTGCACAGATATTACGCATTCAGTATGCATGGGCAAA CTCTGAGATTTCCCAGGTCTGTGCTACCAAACTGTTCAAAAAATATGCAGAGAAATATTCTGCAATTATT GATTCTGACAATGTTGAATCTGGGTTGAATAATTATGCAGAAAACATTTTAACTTTGGCAGGATCTCAAC AAACAGATAGTGACAAGTGGCAGTCTGGATTGTCAATAAATAATGTTTTCAAAATGAGTAGTGTACAGAA GATGATGCAAGCTGGCAAAAAATTCAAAGACTCTCTGTTGGAACCTGCTCTTGCATCAGTGGTAATCCAT AAGGAGGCCACTGTCTTTGATCTTCCTAAATTTAGTGTTTGTGGTAGTTCTCAAGAGAGTGACTCATTAC CTAACTCAGCTCATGATCGAGACCGGACCCAAGACTTCCCGGAGAGCAATCGTTTGAAACTCCTTCAGAA TGCCCAGCCACCTATGGTGACTAACACTGCTAGGACTTGTCCTACATTCTCAGCACCTGTAGGTGAGTCA GCTACTGCAAAATTCCATGTCACACCATTGTTTGGAAATGTCAAAAAGGAAAATCACAGCTCTGCAAAAG AAAACATAGGACTTAATGTGTTCTTATCTAACCAGTCTTGTTTTCCTGCTGCCTGTGAAAATCCACAGAG GAAGTCTTTTTATGGTTCTGGCACCATTGATGCACTTTCCAATCCAATACTGAATAAGGCTTGTAGTAAA ACAGAAGATAATGGCCCAAAGGAGGATAGCAGCCTGCCTACATTTAAAACTGCAAAAGAACAATTATGGG TAGATCAGCAAAAAAAGTACCACCAACCTCAGCGTGCATCAGGGTCTTCATATGGTGGTGTAAAAAAGTC TCTAGGAGCTAGTAGATCCCGAGGGATACTTGGAAAGTTTGTTCCTCCTATACCCAAGCAAGATGGGGGA GAGCAGAATGGAGGAATGCAATGTAAGCCTTATGGGGCAGGACCTACAGAACCAGCACATCCAGTTGATG AGCGTCTGAAGAACTTGGAGCCAAAGATGATTGAACTTATTATGAATGAGATTATGGATCATGGACCTCC AGTAAATTGGGAAGATATTGCAGGAGTAGAATTTGCTAAAGCCACCATAAAGGAAATAGTTGTGTGGCCC ATGTTGAGGCCAGACATCTTTACTGGTTTAAGGGGACCCCCTAAAGGAATTTTGCTCTTTGGTCCTCCTG GGACTGGTAAAACTCTAATTGGCAAGTGCATTGCTAGTCAGTCTGGGGCAACATTCTTTAGCATCTCTGC TTCATCCTTAACTTCTAAATGGGTAGGTGAGGGGGAGAAAATGGTCCGTGCATTGTTTGCTGTTGCAAGG TGTCAGCAACCAGCTGTGATATTTATTGACGAAATTGATTCCTTGTTATCTCAACGGGGAGATGGTGAGC ATGAATCTTCTAGAAGGATAAAAACAGAATTTTTAGTTCAATTAGATGGAGCAACAACATCTTCTGAAGA TCGTATCCTAGTGGTGGGAGCAACAAATCGGCCACAAGAAATTGATGAGGCTGCCCGGAGAAGATTGGTG AAAAGGCTTTATATTCCCCTCCCAGAAGCTTCAGCCAGGAAACAGATAGTAATTAATCTAATGTCCAAAG AGCAGTGTTGCCTCAGTGAAGAAGAAATTGAACAGATTGTACAGCAGTCTGATGCGTTTTCAGGAGCAGA CATGACACAGCTTTGCAGGGAGGCTTCTCTTGGTCCTATTCGCAGTTTACAAACTGCTGACATTGCTACC ATAACACCGGATCAAGTTCGACCCATAGCTTACATTGATTTTGAAAATGCTTTTAGAACTGTGCGACCTA GTGTTTCTCCAAAAGATTTAGAGCTTTATGAAAACTGGAACAAAACTTTTGGTTGTGGAAAGTAA
Translation (674 aa): MQTSSSRSVHLSEWQKNYFAITSGICTGPKADAYRAQILRIQYAWANSEISQVCATKLFKKYAEKYSAII DSDNVESGLNNYAENILTLAGSQQTDSDKWQSGLSINNVFKMSSVQKMMQAGKKFKDSLLEPALASVVIH KEATVFDLPKFSVCGSSQESDSLPNSAHDRDRTQDFPESNRLKLLQNAQPPMVTNTARTCPTFSAPVGES ATAKFHVTPLFGNVKKENHSSAKENIGLNVFLSNQSCFPAACENPQRKSFYGSGTIDALSNPILNKACSK TEDNGPKEDSSLPTFKTAKEQLWVDQQKKYHQPQRASGSSYGGVKKSLGASRSRGILGKFVPPIPKQDGG EQNGGMQCKPYGAGPTEPAHPVDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWP MLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVAR CQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLV KRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIAT ITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCGK
|