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Report for CCDS53190.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
53190.1 |
Reviewed, update pending |
Mus musculus |
X |
Pramex1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:75829](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:53190.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:75829](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome X in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)
Attributes |
CDS uses downstream AUG |
Sequence IDs included in CCDS 53190.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000033786.5 |
ENSMUSP00000033786.5 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000033786.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000033786.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000033786](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000033786](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000113159.7 |
ENSMUSP00000108784.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000113159.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000108784.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000113159](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000108784](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_029459.2 |
NP_083735.2 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_029459.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_083735.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_029459](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_083735](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_029459.3 |
NP_083735.3 |
Pending |
alive |
![Link to Nucleotide Sequence:NM_029459.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_083735.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_029459](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_083735](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_083735.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 53190.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1395 nt): ATGATGATGGATGAAAGAGACCCATCCTCGCTTTTGGATCTGGCTATACAGAGTCTACTAAGTAATGAGC TTGTAGCAATTCATTCTCTGGGGGAGATCCCAAGGGAGCTTTTTGTTCCATTGTTCTCTGCTGCCTTCAC GGGAGGATATAGGAAGATACTGACTTCAATGGTGAAGATTTGGCCTTTTACCTGTCTCCACATTGGAACA TTAAGTGTACAGGAACCCCAGCGTGAACTCCTGAAAGCCATGGTTGAGAGTCTTCAGTTTCTTCCTGCCC AGGACTGTTCTTCTGGGGGCCCTAAGTTGAGGATCCTAGATGTAAGGCAGGGTGTTGACTGCAAGACAAC ATGCCCTGATTTTGGTGCCAGATCTCCAACTTGTTTTCATGGTTGTACTCACTCTGTACACTCTATTCTG AAGTTAGAAAGCCAGTACAGCATTGTAGATCTAAAGCCCGAGAGTCAGTCTGCAATCCAGCCTATGGAAC TACTAGTAGACCTTTCCCTTGATGGTACCTTGAGAGAAAGGGAATTTTTTGCTTTGCTTCTGAATAAAGT ACAGCAGAGCTCAGGGTCTTTGCACCTCTGCTGCCGAGATCTACAAATTGATAGATTTTCTTATGCCAAA AACGCTCTGAAGTTCCTCGATCTAACTTGCATTCAGAACCTGACAGTTGATCAGGCTTCACTGAGTGAAG TCACCACTCTTCTGGCTCGCATGATCTATCTGGACAGCCTGAGTCTCTCTAAAATCACTTATAGATCTTT GCATGGGAAAGTCTTCCGAGTGTTCCTCAACTATCTTGGGCGGATGAACTGCCTGAAAGAGCTCAACCTG TCTTCCTTTAGCCTCACAGACCATCTGGATAGCCTCCTCAGAGCCTTACCACCTAATTTGGATTTCTTGT ATCTGCCGTTCTGTGAAATTTCTTACAGAGATCTCAAATTTCTATCCCAGAGTGCTCAGGCCACCCACTT AAAGCTGTTGAATCTTAGTAACAACCCAATGTATTGGGATGATTGTGGGCCTTTTCAGACTCTTTTGCAG AAGCTCTCAGATACCTTGCAGCATCTGGCCATAAACCATTGCCATTTAACAGATGCCATACTCTCTGCTA TTCTGCCAGCACTATCTAAGTGTTCCCATCTCCGTGTGATTAGCTTTGTCTCTAACCCCATTTCAATGCC TATGCTCCTGAAAATTCTTCATTACTTAACACCTTTGATGGAGCTGAAATACGTGATTTACCCTATCCCT ATACATTGCTATGAACAATGGCAATTTCATGGCAGATTAGACCGGCAGAAGCTCACCGATGTCCAAGCAC AACTGAAGGCAATGCTACAAGCAGCAAAAAGGAGTGACATGAACTGGATCACTTATTCTCAGTAA
Translation (464 aa): MMMDERDPSSLLDLAIQSLLSNELVAIHSLGEIPRELFVPLFSAAFTGGYRKILTSMVKIWPFTCLHIGT LSVQEPQRELLKAMVESLQFLPAQDCSSGGPKLRILDVRQGVDCKTTCPDFGARSPTCFHGCTHSVHSIL KLESQYSIVDLKPESQSAIQPMELLVDLSLDGTLREREFFALLLNKVQQSSGSLHLCCRDLQIDRFSYAK NALKFLDLTCIQNLTVDQASLSEVTTLLARMIYLDSLSLSKITYRSLHGKVFRVFLNYLGRMNCLKELNL SSFSLTDHLDSLLRALPPNLDFLYLPFCEISYRDLKFLSQSAQATHLKLLNLSNNPMYWDDCGPFQTLLQ KLSDTLQHLAINHCHLTDAILSAILPALSKCSHLRVISFVSNPISMPMLLKILHYLTPLMELKYVIYPIP IHCYEQWQFHGRLDRQKLTDVQAQLKAMLQAAKRSDMNWITYSQ
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