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Report for CCDS52578.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
52578.1 |
Public |
Mus musculus |
8 |
Kcnn1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:84036](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:52578.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:84036](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 8 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 52578.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000110078.4 |
ENSMUSP00000105705.3 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000110078.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000105705.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000110078](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000105705](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000212611.1 |
ENSMUSP00000148544.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000212611.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000148544.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000212611](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000148544](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001363407.1 |
NP_001350336.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001363407.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001350336.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001363407](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001350336](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001363407.2 |
NP_001350336.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001363407.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001350336.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001363407](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001350336](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001350336.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_032397.3 |
NP_115773.2 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_032397.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_115773.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_032397](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_115773](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_032397.4 |
NP_115773.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_032397.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_115773.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_032397](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_115773](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_115773.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 52578.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1617 nt): ATGAGTAGCCACAGCCACAATGGCAGCGTGGGGCAGCCTCTGGGCAGCGGGCCTGGATTCCTGGGCTGGG AGCCTGTGGACCCTGAGGCAGGCCGCCCCCTGCAGCCCACCCAAGGCCCAGGCCTGCAGATGGTGGCCAA GGGTCAGCCTGTCAGGCTGTCACCCGGTGGTTCCAGGGGCCACCCCCAGGAGCAGGAGGAGGAAGAGGAA GAGGAGGAGGAGGAGGAGGACAAGACAGGCTCAGGGAAGCCCCCAACAGTCAGCCACCGCCTGGGACACC GCAGGGCCCTCTTTGAAAAGCGTAAACGGCTCAGTGACTATGCGCTCATCTTTGGCATGTTTGGGATTGT CGTCATGGTGACAGAAACAGAGCTGTCCTGGGGTGTATACACCAAGGAGTCACTCTGCTCTTTTGCTCTG AAATGCCTCATCAGCCTGTCCACTGTCATCTTGCTTGGCCTTGTCATCCTGTACCACGCCCGAGAGATCC AGCTGTTCTTGGTGGACAATGGTGCCGACGACTGGCGTATCGCCATGACGTGGGAGCGCGTGTCCCTGAT CTCGCTGGAGTTGGTCGTGTGTGCCATCCACCCGGTGCCCGGCCACTATCGCTTCACGTGGACGGCACGA CTGGCCTTCTCTCTGGTGCCGTCGGCAGCCGAGGCAGACCTGGATGTGCTGCTGTCCATCCCCATGTTCC TGCGCCTCTACCTGCTGGCTCGGGTCATGCTCCTGCACAGCCGCATCTTCACCGATGCATCCAGCCGCAG CATCGGGGCCCTTAACCGCGTCACCTTCAACACACGCTTCGTCACCAAGACGCTCATGACCATCTGCCCC GGCACTGTGTTGTTGGTCTTCAGCGTCTCCTCCTGGATCGTTGCTGCGTGGACAGTGCGCGTGTGTGAGA GGTACCACGATAAGCAGGAAGTGACCAGCAACTTCCTGGGAGCCATGTGGCTCATCTCCATCACCTTCTT GTCCATTGGCTATGGAGACATGGTGCCGCATACCTACTGTGGGAAGGGTGTGTGTCTGCTCACTGGCATC ATGGGAGCAGGCTGCACTGCACTCGTGGTGGCCGTCGTGGCTCGGAAGTTGGAACTCACCAAGGCTGAGA AACACGTGCACAACTTCATGATGGACACACAGCTCACCAAGCGGGTCAAAAATGCTGCTGCAAACGTTCT CAGGGAGACATGGCTCATCTACAAACACACCAGGCTGGTGAAGAAGCCAGACCAAGGCCGGGTTCGGAAA CACCAGCGTAAGTTCCTTCAGGCCATCCATCAGGCTCAGAAGCTCCGAAGTGTGAAGATTGAACAAGGGA AGGTGAACGATCAGGCCAACACGCTGGCTGAGCTGGCCAAGGCACAGAGCATCGCATATGAGGTGGTGTC AGAGCTGCAGGCCCAGCAGGAGGAGTTGGAGGCACGCCTAGCCGCCTTGGAGAGCCGACTGGATGTCCTG GGTGCCTCCCTGCAGGCTCTACCAGGCCTTATAGCCCAAGCCATATGCCCTCTACCACCACCCTGGCCTG GGCCTGGTCACCTGGCCACAGCCACCCAGAGCCCACAAAGCCACTGGCTGCCCACCATGGGATCAGACTG TGGGTGA
Translation (538 aa): MSSHSHNGSVGQPLGSGPGFLGWEPVDPEAGRPLQPTQGPGLQMVAKGQPVRLSPGGSRGHPQEQEEEEE EEEEEEDKTGSGKPPTVSHRLGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESLCSFAL KCLISLSTVILLGLVILYHAREIQLFLVDNGADDWRIAMTWERVSLISLELVVCAIHPVPGHYRFTWTAR LAFSLVPSAAEADLDVLLSIPMFLRLYLLARVMLLHSRIFTDASSRSIGALNRVTFNTRFVTKTLMTICP GTVLLVFSVSSWIVAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGI MGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDQGRVRK HQRKFLQAIHQAQKLRSVKIEQGKVNDQANTLAELAKAQSIAYEVVSELQAQQEELEARLAALESRLDVL GASLQALPGLIAQAICPLPPPWPGPGHLATATQSPQSHWLPTMGSDCG
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