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Report for CCDS24110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24110.1 Public Mus musculus 10 Gnptab 23 108 98 CCDS HistoryNCBI Gene:432486Re-query CCDS DB by CCDS ID:24110.1Re-query CCDS DB by GeneID:432486See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24110.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020251.9 ENSMUSP00000020251.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020251.9Link to Ensembl Protein Viewer:ENSMUSP00000020251.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020251Re-query CCDS DB by Protein ID:ENSMUSP00000020251
Original member Current member NCBI NM_001004164.3 NP_001004164.2 Accepted alive Link to Nucleotide Sequence:NM_001004164.3Link to Protein Sequence:NP_001004164.2Re-query CCDS DB by Nucleotide ID:NM_001004164Re-query CCDS DB by Protein ID:NP_001004164Link to BLAST:NP_001004164.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004164.2 1235 Q69ZN6-1 1235 100% 0 0

Chromosomal Locations for CCDS 24110.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88379419 88379535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88400652 88400737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88411916 88412035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88412605 88412646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88414393 88414598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88419125 88419189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88419426 88419560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88428493 88428654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88429461 88429640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88429840 88430010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88431333 88431456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88432441 88432644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88433049 88434088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88436002 88436201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88436352 88436571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88437435 88437548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88439128 88439213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88439451 88439549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88440224 88440391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88443309 88443399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88445763 88445840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3708 nt):
ATGCTGCTTAAGCTCCTGCAGAGACAGACCTATACCTGCCTATCCCACAGGTATGGGCTCTACGTCTGCT
TC
GTGGGCGTCGTTGTCACCATCGTCTCGGCTTTCCAGTTCGGAGAGGTGGTTCTGGAATGGAGCCGAGA
T
CAGTACCATGTTTTGTTTGATTCCTACAGAGACAACATTGCTGGGAAATCCTTTCAGAATCGGCTCTGT
CTG
CCCATGCCAATCGACGTGGTTTACACCTGGGTGAATGGCACTGACCTTGAACTGCTAAAGGAGCTAC
AG
CAGGTCCGAGAGCACATGGAGGAAGAGCAGAGAGCCATGCGGGAAACCCTCGGGAAGAACACAACCGA
A
CCGACAAAGAAGAGTGAGAAGCAGCTGGAATGTCTGCTGACGCACTGCATTAAGGTGCCCATGCTTGTT
CTG
GACCCGCCCCTGCCAGCCAACTGCACCCTGAAGGATCTGCCAACCCTTTATCCATCTTTCCACGCTG
CC
AGCGACATGTTCAATGTTGCGAAACCAAAAAATCCGTCTACTAATGTCTCCGTTGTCGTTTTTGACAC
T
ACTAAGGATGTTGAAGACGCCCATGCTGGACCGTTTAAGGGAGGCAGCAAACAGATGGTTTGGAGAGCC
TAC
TTGACAACAGACAAAGAAGCCCCTGGCTTAGTGCTGATGCAAGGCTTGGCGTTCCTGAGTGGATTCC
CA
CCGACCTTCAAGGAGACGAGTCAACTGAAGACAAAGCTGCCAGAAAAGCTTTCCTCTAAAATAAAGCT
G
TTGCGGCTGTACTCGGAGGCCAGTGTCGCTCTTCTGAAATTGAATAATCCCAAGGGTTTCCAAGAGCTG
AAC
AAGCAGACCAAGAAGAACATGACCATCGATGGGAAGGAACTGACCATCAGCCCTGCGTATCTGCTGT
GG
GACCTGAGTGCCATCAGCCAGTCCAAGCAGGATGAGGACGTGTCTGCCAGCCGCTTTGAGGATAATGA
A
GAGCTGAGGTACTCGCTGCGATCTATCGAGAGACACGCGCCATGGGTACGGAATATTTTCATTGTCACC
AAC
GGGCAGATTCCATCCTGGCTGAACCTTGACAACCCTCGAGTGACCATAGTGACCCACCAGGACATTT
TC
CAAAATCTGAGCCACTTGCCTACTTTCAGTTCCCCTGCTATTGAAAGTCACATTCACCGCATCGAAGG
G
CTGTCCCAGAAGTTTATTTATCTAAATGACGATGTCATGTTCGGTAAGGACGTCTGGCCGGACGATTTT
TAC
AGCCACTCCAAAGGTCAAAAGGTTTATTTGACATGGCCTGTGCCAAACTGTGCAGAGGGCTGCCCGG
GC
TCCTGGATTAAAGACGGCTATTGTGATAAGGCCTGTAATAACTCAGCCTGTGACTGGGATGGCGGAGA
C
TGCTCTGGTAATACTGCAGGGAACCGGTTTGTTGCAGGAGGTGGGGGTACCGGGAATATTGGAGCTGGA
CAG
CACTGGCAGTTTGGTGGAGGAATAAACACCATCTCTTACTGTAACCAAGGATGTGCAAACTCCTGGC
TG
GCTGACAAGTTCTGTGACCAAGCCTGTAACGTCTTATCCTGCGGGTTTGATGCTGGTGACTGTGGACA
A
GATCATTTTCATGAATTGTATAAAGTAACACTTCTCCCAAACCAGACTCACTATGTTGTCCCCAAAGGT
GAA
TACCTGTCTTATTTCAGCTTTGCAAACATAGCCAGAAGAGGAGTTGAAGGGACCTACAGCGACAACC
CC
ATCATCCGCCACGCGTCCATTGCAAACAAGTGGAAAACCATACACCTGATAATGCACAGTGGGATGAA
C
GCAACCACGATCTATTTTAACCTCACTCTTCAAAACGCCAACGACGAAGAGTTCAAGATCCAGATAGCA
GTA
GAGGTGGACACGAGGGAGGCGCCCAAACTGAATTCTACAACCCAGAAGGCCTATGAAAGTTTGGTTA
GC
CCAGTGACACCTCTTCCTCAGGCTGACGTCCCTTTTGAAGATGTCCCCAAAGAGAAACGCTTCCCCAA
G
ATCAGGAGACATGATGTAAATGCAACAGGGAGATTCCAAGAGGAGGTGAAAATCCCCCGGGTAAATATT
TCA
CTCCTTCCCAAAGAGGCCCAGGTGAGGCTGAGCAACTTGGATTTGCAACTAGAACGTGGAGACATCA
CT
CTGAAAGGATATAACTTGTCCAAGTCAGCCCTGCTAAGGTCTTTCCTGGGGAATTCACTAGATACTAA
A
ATAAAACCTCAAGCTAGGACCGATGAAACAAAAGGCAACCTGGAGGTCCCACAGGAAAACCCTTCTCAC
AGA
CGTCCACATGGCTTTGCTGGTGAACACAGATCAGAGAGATGGACTGCCCCAGCAGAGACAGTGACCG
TG
AAAGGCCGTGACCACGCTTTGAATCCACCCCCGGTGTTGGAGACCAATGCAAGATTGGCCCAGCCTAC
A
CTAGGCGTGACTGTGTCCAAAGAGAACCTTTCACCGCTGATCGTTCCCCCAGAAAGCCACTTGCCAAAA
GAA
GAGGAGAGTGACAGGGCAGAAGGCAATGCTGTACCTGTAAAGGAGTTAGTGCCTGGCAGACGGTTGC
AG
CAGAATTATCCAGGCTTTTTGCCCTGGGAGAAAAAAAAGTATTTCCAAGACCTTCTTGATGAGGAAGA
G
TCATTGAAGACCCAGTTGGCGTACTTTACAGACAGCAAACATACCGGGAGGCAACTAAAAGATACATTT
GCA
GACTCCCTCCGATACGTCAATAAAATTCTCAACAGCAAGTTTGGATTCACATCCAGGAAAGTCCCTG
CA
CACATGCCGCACATGATTGACAGGATCGTTATGCAAGAACTCCAAGATATGTTCCCTGAAGAATTTGA
C
AAGACTTCATTTCACAAGGTGCGTCACTCTGAGGACATGCAGTTTGCCTTCTCCTACTTTTATTACCTC
ATG
AGTGCAGTTCAGCCCCTCAATATTTCCCAAGTCTTTCATGAAGTAGACACAGACCAATCTGGTGTCT
TG
TCTGATAGGGAAATCCGAACACTGGCCACGAGAATTCACGACCTACCTTTAAGCTTGCAGGATTTGAC
A
GGTTTGGAACACATGTTAATAAATTGCTCAAAAATGCTCCCCGCTAATATCACTCAACTCAACAACATC
CCA
CCGACTCAGGAAGCATACTACGACCCCAACCTGCCTCCGGTCACTAAGAGTCTTGTCACCAACTGTA
AG
CCAGTAACTGACAAGATCCACAAAGCCTATAAAGACAAGAACAAATACAGGTTTGAAATCATGGGAGA
G
GAAGAAATCGCTTTCAAGATGATACGAACCAATGTTTCTCATGTGGTTGGCCAGTTGGATGACATCAGA
AAA
AACCCCAGGAAGTTCGTTTGTCTGAATGACAACATTGACCACAACCATAAAGATGCCCGGACAGTGA
AG
GCTGTCCTCAGGGACTTCTATGAGTCCATGTTTCCCATACCTTCCCAGTTTGAGCTGCCAAGAGAGTA
T
CGGAACCGCTTTCTGCACATGCATGAGCTCCAAGAATGGCGGGCATATCGAGACAAGCTGAAGTTTTGG
ACC
CACTGCGTACTAGCAACGTTGATTATATTTACTATATTCTCATTTTTTGCTGAACAGATAATTGCTC
TG
AAGCGAAAGATATTTCCCAGGAGGAGGATACACAAAGAAGCTAGTCCAGACCGAATCAGGGTGTAG


Translation (1235 aa):
MLLKLLQRQTYTCLSHRYGLYVCFVGVVVTIVSAFQFGEVVLEWSRDQYHVLFDSYRDNIAGKSFQNRLC
L
PMPIDVVYTWVNGTDLELLKELQQVREHMEEEQRAM
RETLGKNTTEPTKKSEKQLECLLTHCIKVPMLV
L
DPPLPANCTLKDLPTLYPSFHAASDMFNVAKPKNPSTNVSVVVFDTTKD
VEDAHAGPFKGGSKQMVWRA
Y
L
TTDKEAPGLVLMQGLAFLSGFPPTFKETSQLKTKLPEKLSSKIKLLRLYSEASVALLKLNNPKGFQEL
N
KQTKKNMTIDGKELTISPAYLLWDLSAISQ
SKQDEDVSASRFEDNEELRYSLRSIERHAPWVRNIFIVT
N
GQIPSWLNLDNPRVTIVTHQ
DIFQNLSHLPTFSSPAIESHIHRIEGLSQKFIYLNDDVMFGKDVWPDDF
Y
SHSKGQK
VYLTWPVPNCAEGCPGSWIKDGYCDKACNNSACDWDGGDCSGNTAGNRFVAGGGGTGNIGAG
Q
HWQFGGGINTISYCNQGCANSWLADKFCDQACNVLSCGFDAGDCGQ
DHFHELYKVTLLPNQTHYVVPKG
E
YLSYFSFANIARRGVEGTYSDNPIIRHASIANKWKTIHLIMHSGMNATTIYFNLTLQNANDEEFKIQIA
V
EVDTREAPKLNSTTQKAYESLVSPVTPLPQADVPFEDVPKEKRFPKIRRHDVNATGRFQEEVKIPRVNI
S
LLPKEAQVRLSNLDLQLERGDITLKGYNLSKSALLRSFLGNSLDTKIKPQARTDETKGNLEVPQENPSH
R
RPHGFAGEHRSERWTAPAETVTVKGRDHALNPPPVLETNARLAQPTLGVTVSKENLSPLIVPPESHLPK
E
EESDRAEGNAVPVKELVPGRRLQQNYPGFLPWEKKKYFQDLLD
EEESLKTQLAYFTDSKHTGRQLKDTF
A
DSLRYVNKILNSKFGFTSRKVPAHMPHMIDRIVMQELQD
MFPEEFDKTSFHKVRHSEDMQFAFSYFYYL
M
SAVQPLNISQVFHEVDTDQSGVLSDREIRTLATRIHDLPLSLQ
DLTGLEHMLINCSKMLPANITQLNNI
P
PTQEAYYDPNL
PPVTKSLVTNCKPVTDKIHKAYKDKNKYRFEIMGEEEIAFKMIRTNVSHVVGQLDDIR
K
NP
RKFVCLNDNIDHNHKDARTVKAVLRDFYESMFPIPSQFELPREYRNRFLHMHELQEWRAYRDKLKFW
T
HCVLATLIIFTIFSFFAEQ
IIALKRKIFPRRRIHKEASPDRIRV



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser