CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS51241.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
51241.1 |
Public |
Mus musculus |
4 |
Pramel17 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:545662](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:51241.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:545662](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Provisional (this record has not been manually reviewed by the collaboration) Sequence IDs included in CCDS 51241.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000084386.5 |
ENSMUSP00000081421.5 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000084386.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000081421.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000084386](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000081421](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000106919.7 |
ENSMUSP00000102532.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000106919.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000102532.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000106919](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000102532](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001033790.3 |
NP_001028962.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001033790.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001028962.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001033790](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001028962](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001028962.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 51241.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1431 nt): ATGAGCACCTACAACCCTCCCACACTCCTGCAGCTCGCACTGGACGGGGTGCTGAGGAAGGATTCCATAG ACTTCTCTGATCTGGAGTACCTGCCCATCACGCTCTTCCCACCACTCTTCATAAAGGCCTTCAATAGCAG ACACACAGAGATAGTAAAGAAAATGGTGGCAACCTGGCCCTTTCCCTGCCTCCCTGTGGGGGCACTGCTT AAAACCGCTGGTGTGGAAATGCTGCAAGCTGTGCTGGATGGCATAGATATACTGCTGACACAGAATGTTA GTCTCAGGTGCAAGCTTCAAGTGTTGGACTTGAGATTTTTGCACCAGGATTTCTGGACTGGAAAACAGAA TGCCATCTGCCCAGCAGATATTTTGATCAAGAAGCAAGTCCCAGAGGGCCTTCCTAACTATCCACTAAGG CAGTGTTTGCAGGTAGTCACTAACCTGGCCCTAGTATCTTCTCTAAACGAACACCAAATATGCTTGCTGC AGTGGGCCCAACAAAAAAAAGACTCTTTGCAGCTATGCTGTCTGAAGATGACGATTTATAACCTCCCACC AGAGGTTATCAGCGAGGTCTTGGACACTTTCCAGCCGACCTATATTGTGGATTTGGAAATACACACACGA GAGGTCATGTCCTTCCTAGGTTTCTTTGCCCATTTCCTTGGCCAGATGAGAAATCTTGTCAAATTCTATC TAAATCAAATCGACTTCTACTTTAGTGTTGCGAACACAGTGACAGATGGAAAGATAGGTGCTGCCAAATT CTTTTCTCAGTTCTCCCAACTCAACCATCTCCAGCATGTCTATATGAATGGTGCCTACATTTCCTATGAC AACATGAAAAAGTTGTTCAGATGCCTGAAGAGTCCCTTGGAGACCTTGTTTTTTACTTTCTGCCATCTCT CAATGTCCGACTTGAGACACATGTCAGACTGTCAGAGGCTCTATCAATTGAAACACCTATACTTAAAGGG TGTAGTGTTTTCCAAGTCATATTTCAAGAGTCTCCGAGTTCTCCTAGAGAATGTATCTGCAACTCTACAG ACCCTGGGGTTAGAGCACTGCAGGATGAAGGACTCTCACCTCAAAGTCCTCTTGCCTGCCTTGATCCAGT GCTCCCAGCTCATCTTTGTCAATTTCTTTGACAACCACTTCTCCAGTCCTGTACTGAAGGACCTTCTGCG ATGCATGGCTAACCTAAGCAAGTTGACTGGAGAGCGGTACCCCGTCCCTGTAGAGTGCTATAATGACATA GGTAAAGTTATGGTGGAGAGATTTTTCCAACTGTGTCCTGAGCTCATGGATCTACTCACGGCTAAAAGGC AGCCCAAGAAAATCTTCTTTGCTACTGTCTGCTGCCCTAATTGTTTGAGACGCTGTGTCTATGACTTGAA CACCACCAGACTTTGCCATTGTTGGGAGTAA
Translation (476 aa): MSTYNPPTLLQLALDGVLRKDSIDFSDLEYLPITLFPPLFIKAFNSRHTEIVKKMVATWPFPCLPVGALL KTAGVEMLQAVLDGIDILLTQNVSLRCKLQVLDLRFLHQDFWTGKQNAICPADILIKKQVPEGLPNYPLR QCLQVVTNLALVSSLNEHQICLLQWAQQKKDSLQLCCLKMTIYNLPPEVISEVLDTFQPTYIVDLEIHTR EVMSFLGFFAHFLGQMRNLVKFYLNQIDFYFSVANTVTDGKIGAAKFFSQFSQLNHLQHVYMNGAYISYD NMKKLFRCLKSPLETLFFTFCHLSMSDLRHMSDCQRLYQLKHLYLKGVVFSKSYFKSLRVLLENVSATLQ TLGLEHCRMKDSHLKVLLPALIQCSQLIFVNFFDNHFSSPVLKDLLRCMANLSKLTGERYPVPVECYNDI GKVMVERFFQLCPELMDLLTAKRQPKKIFFATVCCPNCLRRCVYDLNTTRLCHCWE
|