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Report for CCDS15322.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
15322.1 |
Public |
Mus musculus |
1 |
Pkp1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:18772](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:15322.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:18772](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 1 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 15322.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000027667.12 |
ENSMUSP00000027667.6 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000027667.12](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000027667.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000027667](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000027667](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000163260.7 |
ENSMUSP00000128418.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000163260.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000128418.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000163260](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000128418](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001313701.1 |
NP_001300630.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001313701.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001300630.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001313701](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001300630](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001300630.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_019645.3 |
NP_062619.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_019645.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_062619.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_019645](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_062619](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_062619.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 15322.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2187 nt): ATGAACCACTCTCCGCTCAAGACCGCGCTGGCGTACGAATGCTTCCAGGACCAGGACAACTCCACGCTGG CTTTGCCCTCTGACCAAAAGATGAAGACCGGCACGTCGGGCAGGCAGCGCGTGCAGGAGCAAGTGATGAT GACCGTCAAACGGCAGAAGTCCAAGTCTTCCCAGTCGTCCACCTTGAGTCACTCCAACCGAGGTTCCATG TATGATGGGCTGGCTGACAATTACAACAACTACGGCACCACGAGCAGAAGCAGCTACTTCTCCAAGTTCC AGGCAGGGAATGGCTCGTGGGGATATCCGATCTACAATGGGACCCTCAAGCGGGAGCCCGACAACAGACG CTTCAGCTCCTATAGCCAGATGGAGAACTGGAGCCGGCACTATCCCCGAGGCAGCTGTGCCACCCCGGGC GCTGGCAGTGACATCTGCTTCATGCAGAAAATCAAGGCAAGCCGCAGTGAGCCTGACCTCTACTGTGACC CAAGGGGCACACTGCGCAAGGGCACCCTGGGCAGCAAGGGCCACAAGACCACCCAGAACCGATGCAGCTT CTACAGCACTTGCAGTGGTCAGAAGGCTGTCAAGAAGTGTCCCGTGCGGCCGCCCTCCTGCACCTCCAAG CAAGACCCGGTGTATGTGCCGCCTATCTCCTGCAACAAGGACCTGTCCTTCGGCCACTCGAGGGCCAGTT CCAAGATCTGCAGTGAGGACATTGAGTGTAGTGGGCTGACCATCCCCAAGGCTGTGCAGTACCTGTGCTC CCAGGATGAGAAGTACCAGGCCATCGGAGCCTATTACATCCAGCACACCTGCTTCCAGGATGAATCTGCC AAGCAACAGGTCTATCAGCTGGGGGGCATCTGCAAGCTGGTGGACCTCCTCCGCAGCCCCAATCAGAATG TCCAGCAGGCTGCTGCCGGGGCCCTGCGCAACCTGGTGTTCAGGAGCACCCCCAACAAGCTGGAGACCAG GAGGCAGAACGGAATCCGTGAAGCTGTCAGCCTCCTGAGGAGAAGCGGGAGCACGGAGATCCAAAAACAG CTGACTGGGCTCCTCTGGAACCTGTCTTCCACTGATGAGCTGAAGGAGGAGCTGGTGGCCGACGCCCTGC CTGTTCTGACTGACCGGGTCATCATTCCTTTCTCTGGCTGGTGTGATGGTAACAGCAACATGTCCCGGGA AGTAGTGGACCCTGAGGTCTTCTTCAATGCTACAGGCTGCTTGAGGAACCTGAGTTCAGCTGATGCTGGC CGCCAGACTATGCGGAACTACTCTGGGCTCATTGACTCCCTCATGGCCTATGTCCAGAACTGCGTGGCTG CCAGCCGCTGCGATGACAAGTCTGTGGAGAACTGCATGTGTATCCTGCATAACCTCTCCTACCGCCTGGA CGCCGAGGTGCCCACCCGCTACCGCCAGCTGGAGTACAATACCCGCAATGCCTACACCGAGAAGTCCTCC ACTGGCTGCTTCAGCAACAGGGGTGACAAGATGATGAACAATAACTATGACTGCCCACTTCCGGAGGAAG AGACCAACCCCAAGGGCAGCAGCTGGCTGTACCACTCAGATGCCATCCGGACCTACCTGAACCTCATGGG AAAGAGCAAGAAAGATGCTACCTTGGAGGCCTGTGCTGGGGCCCTGCAAAACCTGACAGCCAGCAAGGGG CTGATGTCCAATGGTATGAGTCAGTTAATTGGAATAAAGGAAAAGGGCCTGCCACAAATCGCCCGTCTCC TGCAATCTGGCAATTCGGATGTGGTGCGGTCCGGAGCCTCTCTGCTGAGCAACATGTCTCGCCACCCTGT GCTGCACAGAGTGATGGGAAACCAGGTGTTCCCAGAGGTAACCAGACTCCTCACTAGCCACACCGGCAAT ACCAGCAACTCTGAAGATATCTTGTCCTCAGCCTGCTACACTGTGAGGAACCTGATGACCTCACAGCCTC AGATGGCCAAGCAGTACTTCTCCAACAGCATGCTCAACAATGTCTTCAACTTGTGCCGCAACACTGCCTC CTCACCTAAGGCTGCAGAGGCTGCCCGGCTACTCCTGTCTGACATGTGGGCCAGCAAGGAGCTGCAGAGT GTCCTCAGGCAGCAAGGTTTCGATAGGAATATGATGGGAAACATAGCTGGGGCCAACAACCTCAGAAACT TCACCTCCCGGTTCTAA
Translation (728 aa): MNHSPLKTALAYECFQDQDNSTLALPSDQKMKTGTSGRQRVQEQVMMTVKRQKSKSSQSSTLSHSNRGSM YDGLADNYNNYGTTSRSSYFSKFQAGNGSWGYPIYNGTLKREPDNRRFSSYSQMENWSRHYPRGSCATPG AGSDICFMQKIKASRSEPDLYCDPRGTLRKGTLGSKGHKTTQNRCSFYSTCSGQKAVKKCPVRPPSCTSK QDPVYVPPISCNKDLSFGHSRASSKICSEDIECSGLTIPKAVQYLCSQDEKYQAIGAYYIQHTCFQDESA KQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTPNKLETRRQNGIREAVSLLRRSGSTEIQKQ LTGLLWNLSSTDELKEELVADALPVLTDRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCILHNLSYRLDAEVPTRYRQLEYNTRNAYTEKSS TGCFSNRGDKMMNNNYDCPLPEEETNPKGSSWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG LMSNGMSQLIGIKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPVLHRVMGNQVFPEVTRLLTSHTGN TSNSEDILSSACYTVRNLMTSQPQMAKQYFSNSMLNNVFNLCRNTASSPKAAEAARLLLSDMWASKELQS VLRQQGFDRNMMGNIAGANNLRNFTSRF
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