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Report for CCDS15737.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
15737.1 |
Public |
Mus musculus |
2 |
Psd4 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:215632](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:15737.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:215632](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 15737.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000056641.14 |
ENSMUSP00000062415.8 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000056641.14](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000062415.8](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000056641](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000062415](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000102942.7 |
ENSMUSP00000100006.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000102942.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000100006.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000102942](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000100006](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000166388.1 |
ENSMUSP00000132395.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000166388.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000132395.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000166388](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000132395](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001355231.1 |
NP_001342160.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001355231.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001342160.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001355231](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001342160](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001342160.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001355232.1 |
NP_001342161.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001355232.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001342161.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001355232](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001342161](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001342161.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_177611.4 |
NP_808279.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_177611.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_808279.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_177611](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_808279](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_808279.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 15737.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3018 nt): ATGATGGGGGACCACCTCAGACCCATGGAATGTCTCAATATTTGCTTGGAAGACAACTTACAACCCTGTC CAGAAGCATATCCAAGTGAAATACATGGCCATCCAGGCCCTTCTGAACCTTGCCAGGAACATACCTGTCC GTTTGACCCCCCAGAATCTGCCAGACCTGATGCTCCTCATGGTAACTCTGGTGTGGAGTCCACTCATCTA GAAAACTGCTTGGTGCAGGTACAGGCTAGGCAGGCCTCAGCATCACTGAGGTCACTGGAGGACAACAGCT CTTTGGGGAGTCCACAGCAAAACCAGAGCTCATCCACCCAGGTGGTATTCTGGGCTGGCATCCTGCAGGC CCAGATGTGTGTCCTGGACCTGGAGGAGGAGCTGGAGAAAACAGAGGGACTCAGAGCAGAACTCAGGTGC TGCATCCCACCACCCTCTAAGGACCTCCTTGGAGATGAAGGTCTGAGCCCCAGCCGACCCGAGGAGGATG AAGACTCTGGAGATGACAGCAGTGGGCCTGAGGAGGAGAACCAGACCTGGCCAAGGGAGAAAATTCCAGG CTCCTCCCTAGAGTGGGGTGCTGAGGAGGACAGTATCTTCTTTGATAATCCCCTCTTCCTGGAGAGCCCT TGCTCAGACACCAGCACTGAAGGAGAATGCTTTTCCTGGGGGTACCCGAATTCCCACCCAGACATGAAGA CCTGGCATCAGAGCCCTCAAACTCTGGACTCTCCTCTCCAAAAAGGCACAGGGCTCTGGAGGCAAGAAAA TGAGCTGGATTTGGGGAGCGACACTGCTGACCATGGTGGGTGTTCCACCCCTCCATTCCCTGTGCCTTCC TATAAGATGCACCCCTGCTTGGCCTTAGGATCCACTGAAGGGGATCCCACGGTACCTCCTGATCAGGAGG GTGAGACTTCTTGTGAAGATGATCTTGGCCATGGCTCACCTAAAGCACCCTTTGTAGACCATGAATTGAT CCAAGAATCAGATAACTTTGAATTTGACCTTAGACCTGCCACAACACATCCTGTACAGCCTTGGGGTTCA CAGACATCCCAAAGCCTTTCTGACCTGACTCAACCCATACTTGAGGACCTGCAGAGAGAAGATCCTTCCA GGTCCCAGGAAACTCTTATCTCCCAGAACAGAGGTGAGAGGGATGCTGGCTGTTTCCAGGAGCCCGTGTT CTGCACTTTGGCCCCCTGGGGGAGCCAAACCTCTTTACTGGAGCCTAACTGCCCAGAATCTGAGGGTAGA GGCTCTGGCCCCCAGCCCAGCCCAGTGTCTTCCCAGGATAGCAGCCCACGGGTTCTGCTGCACAGCCCCA AGTGGCCACAAGATGCCTCACACCTTCTCCAGAAGGATAGATCAGAGTTGAGCTCCCTAAAGGAAGAGGA GACAGAGGAGGTCCCAAGCCTGAGGCAGGAGGCAGAATGTGAAGATACATCCAGAAGTGAAGATGCTTCA GCCAACCAGCACCATGTTCACTTGGCTTCTGCAGAAGGGCTTCCTGAGAGCCCCATGCCCCAAGCTCAAT CTCCAGAGGAAGGCTGGAGGCCATCATCGTCTAGAGAGAAGTTGGCTAATGACATCAGAAATGACAAGGG AGCATGGAACCTAGCCCTGCGCCTCTATCAACTGAATGGTTTTCGGAAGTCTGAAGTAGCTGCCCACCTA CGCAAGAACAATGACTTCAGCAGGGCTGTAGCCGAGGCCTACTTGTCTTTCTTCCAGTTCGAAGGTCAGA GCCTGGACAGAGCCCTCCGTGGTTTCCTCCAGGCCCTGGTGCTCAGTGGAGAGACTCAGGAGCGGGAACG AATTCTCTACCAGTTTTCCAAACGTTTCCATTACTGCAATCCTGGAGCCTTCCCCTCAGTAGATTCTGTT CACACGTTGACCTGTGCAATCATGCTCCTTAACACAGACCTACATGGGCAGAACATTGGCAAGAGCATGA GCTGTCAGGAATTTGTAACCAACTTGAATGGCCTGCAGGATGGCAGGAACTTCCCCAAAGAGCTGCTGAA GGCCCTCTACTGGTCTATCCGCAGTGAGAAGCTCGAATGGGCTATAGATGAAGAAGATGCAGACAGACCC GAGAAGGACCAACCCTCTCCCTCAGCTGGCAAGATAAGCAGCCCCTTCCTGCAGATGGCTCAGGATCCCA CGATGCCCACCTATAAGCAGGGCATTCTGGCTCGGAAGATGCATCACATTGCTGATGGCAAGAAGACTCC ATGGGGCAAACGAGGCTGGAAGATGTTTCACACCTTACTGAGAGGGATGGTCCTCTACTTCCTGAAGGGA GAGGGCCAATGGCTGGATGGAGAGAGTTTGGTAGGACATATGGTGGATGAGCCTGTGGGAGTACACCACT CACTAGCCAGCCCAGCCACCCACTACACCAAGAAGCCACATGTCTTCCAGCTTCGGACTGCAGACTGGCG TCTCTACCTCTTCCAGGCACCTACTGCCAAAGAAATGGCTTCCTGGATTGCGCGAATCAACCTGGCGGCT GCCACCCACTCAGCACCTCCTTTTCCGGCTGCAGTGGGCTCCCAACGCAGATTCGTGAGGCCCATCCTGC CCATGAGCCCGGTGCAGAGCTCCCTGGAGGAGCAGCATCGATCCCACGAGAACTGCCTGGATGCTGCCTC AGATGACCTGTTGGATTTGCAGAGGAACCTGCCGGAGCGACGGGGCCGCAGCCGCGAGCTGGAGGAATAC CGCTTACGGAAGGAGTATCTGGAGCACGAGAAAACTCGATATGAGACCTACGTACAGCTTCTGGTGGCCC GCCTACACTTCCCTTTGGGGGACCTGGCTCTGTGGGAAGATCAGCTTGGGAAGGAAACTGACGGTTCTCA GGAGCCCAGGCCAAGCCTGAAGAAGTCCCACTCAAGCCCATCACTGCACCAGGAGGAGGCCCCCACCACA GCCAAGGTGAAACGCAACATCTCAGAGCGCAGAACCTACCGGAAGATCATTCCCAAGAGGAACCGCAATC AGCTGTGA
Translation (1005 aa): MMGDHLRPMECLNICLEDNLQPCPEAYPSEIHGHPGPSEPCQEHTCPFDPPESARPDAPHGNSGVESTHL ENCLVQVQARQASASLRSLEDNSSLGSPQQNQSSSTQVVFWAGILQAQMCVLDLEEELEKTEGLRAELRC CIPPPSKDLLGDEGLSPSRPEEDEDSGDDSSGPEEENQTWPREKIPGSSLEWGAEEDSIFFDNPLFLESP CSDTSTEGECFSWGYPNSHPDMKTWHQSPQTLDSPLQKGTGLWRQENELDLGSDTADHGGCSTPPFPVPS YKMHPCLALGSTEGDPTVPPDQEGETSCEDDLGHGSPKAPFVDHELIQESDNFEFDLRPATTHPVQPWGS QTSQSLSDLTQPILEDLQREDPSRSQETLISQNRGERDAGCFQEPVFCTLAPWGSQTSLLEPNCPESEGR GSGPQPSPVSSQDSSPRVLLHSPKWPQDASHLLQKDRSELSSLKEEETEEVPSLRQEAECEDTSRSEDAS ANQHHVHLASAEGLPESPMPQAQSPEEGWRPSSSREKLANDIRNDKGAWNLALRLYQLNGFRKSEVAAHL RKNNDFSRAVAEAYLSFFQFEGQSLDRALRGFLQALVLSGETQERERILYQFSKRFHYCNPGAFPSVDSV HTLTCAIMLLNTDLHGQNIGKSMSCQEFVTNLNGLQDGRNFPKELLKALYWSIRSEKLEWAIDEEDADRP EKDQPSPSAGKISSPFLQMAQDPTMPTYKQGILARKMHHIADGKKTPWGKRGWKMFHTLLRGMVLYFLKG EGQWLDGESLVGHMVDEPVGVHHSLASPATHYTKKPHVFQLRTADWRLYLFQAPTAKEMASWIARINLAA ATHSAPPFPAAVGSQRRFVRPILPMSPVQSSLEEQHRSHENCLDAASDDLLDLQRNLPERRGRSRELEEY RLRKEYLEHEKTRYETYVQLLVARLHFPLGDLALWEDQLGKETDGSQEPRPSLKKSHSSPSLHQEEAPTT AKVKRNISERRTYRKIIPKRNRNQL
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