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Report for CCDS89581.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
89581.1 |
Public |
Mus musculus |
2 |
Slc12a5 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:57138](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:89581.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:57138](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 89581.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000202623.3 |
ENSMUSP00000144623.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000202623.3](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000144623.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000202623](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000144623](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001355480.1 |
NP_001342409.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001355480.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001342409.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001355480](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001342409](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001342409.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001342409.1 |
1138 |
Q91V14-1 |
1138 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 89581.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3417 nt): ATGAGCCGCAGGTTCACGGTCACCTCGCTGCCCCCCGCAGCGTCCGCCGCCTCCGCTGACCCAGAGTCCC GCCGGCATTCGGTGGCCGATCCCCGCCGGCTCCCGAGGGAAGACGTCAAAGGTGATGGCAACCCCAAAGA GAGCAGTCCCTTCATCAACAGCACGGACACGGAGAAGGGCAGAGAGTACGATGGCAGGAACATGGCCCTG TTTGAGGAGGAGATGGACACCAGCCCCATGGTATCCTCCCTGCTCAGTGGGCTGGCCAACTACACCAACC TACCCCAGGGAAGTAGAGAGCATGAAGAAGCAGAAAATAATGAGGGTGGAAAAAAGAAGCCGGTGCAGGC TCCTCGAATGGGCACCTTCATGGGTGTGTACCTGCCGTGCCTGCAGAACATCTTTGGTGTCATCCTCTTC CTGCGGCTCACGTGGGTGGTGGGCATCGCGGGCATCATGGAGTCCTTCTGTATGGTCTTCATTTGCTGCT CCTGTACGATGCTCACAGCCATTTCCATGAGTGCAATCGCAACCAATGGTGTTGTGCCTGCTGGTGGCTC GTACTACATGATTTCCAGGTCTCTGGGCCCGGAGTTTGGGGGCGCCGTGGGCCTCTGCTTCTACCTGGGC ACCACCTTTGCTGGGGCTATGTACATCCTTGGCACGATCGAGATCCTGCTGGCTTATCTCTTCCCAGCTA TGGCCATCTTCAAGGCAGAAGATGCCAGTGGGGAGGCGGCCGCCATGCTGAACAACATGCGGGTGTATGG CACCTGTGTGCTCACCTGCATGGCCACCGTTGTCTTTGTGGGTGTCAAGTACGTCAACAAGTTTGCCTTG GTCTTCCTGGGTTGCGTCATCCTGTCCATCCTGGCCATCTATGCAGGGGTCATCAAGTCTGCCTTCGACC CACCCAATTTCCCGATCTGCCTCCTGGGGAACCGCACGCTGTCTCGCCATGGCTTTGATGTCTGTGCCAA GCTGGCTTGGGAAGGAAATGAGACAGTGACCACACGGCTCTGGGGCCTTTTCTGCTCCTCCCGCCTCCTC AATGCCACCTGTGATGAGTACTTCACCCGAAACAATGTCACAGAGATCCAGGGCATTCCTGGTGCTGCCA GTGGTCTCATCAAAGAGAACCTGTGGAGTTCTTACCTGACCAAAGGGGTGATTGTCGAGAGGCGTGGGAT GCCCTCTGTGGGCCTGGCAGACGGTACCCCCGTAGACATGGACCACCCCTATGTCTTCAGTGATATGACC TCCTACTTCACCCTGCTCGTTGGTATCTACTTCCCCTCAGTCACAGGGATCATGGCTGGCTCAAACCGAT CTGGAGACCTGCGGGATGCCCAGAAGTCTATCCCTACTGGAACTATCCTGGCCATTGCTACCACCTCTGC TGTCTACATCAGCTCTGTTGTTCTGTTTGGAGCCTGCATCGAGGGGGTCGTCTTACGGGACAAGTTTGGG GAAGCTGTGAATGGCAACTTGGTGGTGGGCACCCTGGCCTGGCCTTCTCCCTGGGTCATCGTCATAGGCT CTTTCTTCTCTACCTGTGGGGCTGGATTACAGAGCCTCACAGGGGCCCCACGTCTGCTGCAGGCCATCTC CCGGGATGGCATAGTGCCCTTCCTGCAGGTCTTTGGCCATGGCAAAGCTAATGGAGAGCCAACCTGGGCG CTGCTGCTGACTGCCTGCATCTGTGAGATCGGCATCCTCATAGCCTCCCTGGATGAGGTCGCCCCTATAC TTTCCATGTTCTTCCTAATGTGTTACATGTTTGTGAACTTGGCTTGTGCGGTGCAGACGCTGCTGAGGAC ACCCAACTGGAGGCCACGATTTCGCTATTACCACTGGACTCTCTCCTTCCTGGGCATGAGCCTCTGCCTG GCCCTCATGTTCATTTGCTCCTGGTACTACGCACTGGTGGCCATGCTCATTGCCGGACTCATTTATAAGT ACATCGAGTACCGGGGGGCGGAGAAGGAGTGGGGGGATGGAATCCGAGGCCTGTCTCTCAGTGCAGCACG CTATGCTCTCTTGCGCCTGGAGGAAGGACCTCCGCATACGAAGAACTGGAGGCCCCAGCTGCTGGTGCTG GTGCGTGTGGACCAGGATCAGAACGTGGTGCATCCGCAGCTGCTCTCCCTGACCTCCCAGCTCAAGGCAG GGAAGGGCCTGACCATTGTGGGCTCCGTCCTTGAGGGCACCTTTCTGGACAACCATCCACAGGCTCAGCG GGCAGAGGAGTCTATCAGGCGCCTGATGGAGGCTGAGAAGGTGAAGGGCTTCTGCCAGGTAGTGATCTCC TCCAACCTGCGTGATGGTGTGTCCCACCTGATCCAGTCTGGGGGCCTCGGGGGATTGCAACACAATACCG TGCTGGTGGGCTGGCCTCGCAACTGGAGGCAGAAGGAGGATCATCAGACATGGAGGAACTTCATCGAACT GGTCCGGGAAACTACAGCCGGCCACCTCGCCCTGCTGGTCACCAAGAATGTTTCCATGTTTCCCGGGAAC CCTGAGCGCTTCTCGGAGGGCAGCATTGACGTGTGGTGGATTGTGCACGACGGGGGCATGCTCATGCTGC TGCCCTTCCTGCTGCGACACCACAAGGTCTGGAGGAAATGCAAAATGCGGATCTTCACCGTGGCCCAGAT GGACGATAACAGTATCCAGATGAAGAAGGACCTGACCACGTTTCTGTACCACTTACGCATTACTGCAGAG GTGGAGGTGGTGGAGATGCATGAGAGCGACATCTCGGCATACACCTACGAGAAGACATTAGTAATGGAGC AACGATCTCAGATCCTCAAACAGATGCACCTCACCAAGAACGAGCGGGAACGGGAGATCCAGAGCATCAC AGACGAGTCTCGGGGCTCCATTCGGAGGAAGAATCCAGCCAACCCCCGGCTCCGCCTCAATGTTCCCGAA GAGACAGCGTGTGACAATGAGGAGAAGCCAGAGGAGGAGGTGCAGCTGATCCATGACCAGAGTGCTCCCA GCTGCCCTAGCAGCTCGCCATCTCCAGGGGAGGAGCCCGAGGGGGAGAGGGAGACAGACCCAGAGGTGCA TCTTACCTGGACCAAGGATAAGTCAGTGGCAGAGAAGAATAAAGGCCCCAGTCCCGTCTCCTCCGAGGGC ATCAAGGACTTCTTCAGCATGAAGCCGGAGTGGGAAAACTTGAACCAGTCCAATGTACGGCGCATGCACA CAGCTGTGCGGCTGAACGAGGTCATCGTGAATAAATCTCGGGATGCCAAGCTAGTTTTGCTCAACATGCC CGGGCCTCCCCGCAACCGCAATGGGGATGAAAACTACATGGAATTCTTGGAGGTCCTCACTGAGCAACTG GACCGGGTGATGCTGGTCCGCGGTGGCGGCCGAGAGGTCATCACCATCTACTCCTGA
Translation (1138 aa): MSRRFTVTSLPPAASAASADPESRRHSVADPRRLPREDVKGDGNPKESSPFINSTDTEKGREYDGRNMAL FEEEMDTSPMVSSLLSGLANYTNLPQGSREHEEAENNEGGKKKPVQAPRMGTFMGVYLPCLQNIFGVILF LRLTWVVGIAGIMESFCMVFICCSCTMLTAISMSAIATNGVVPAGGSYYMISRSLGPEFGGAVGLCFYLG TTFAGAMYILGTIEILLAYLFPAMAIFKAEDASGEAAAMLNNMRVYGTCVLTCMATVVFVGVKYVNKFAL VFLGCVILSILAIYAGVIKSAFDPPNFPICLLGNRTLSRHGFDVCAKLAWEGNETVTTRLWGLFCSSRLL NATCDEYFTRNNVTEIQGIPGAASGLIKENLWSSYLTKGVIVERRGMPSVGLADGTPVDMDHPYVFSDMT SYFTLLVGIYFPSVTGIMAGSNRSGDLRDAQKSIPTGTILAIATTSAVYISSVVLFGACIEGVVLRDKFG EAVNGNLVVGTLAWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAISRDGIVPFLQVFGHGKANGEPTWA LLLTACICEIGILIASLDEVAPILSMFFLMCYMFVNLACAVQTLLRTPNWRPRFRYYHWTLSFLGMSLCL ALMFICSWYYALVAMLIAGLIYKYIEYRGAEKEWGDGIRGLSLSAARYALLRLEEGPPHTKNWRPQLLVL VRVDQDQNVVHPQLLSLTSQLKAGKGLTIVGSVLEGTFLDNHPQAQRAEESIRRLMEAEKVKGFCQVVIS SNLRDGVSHLIQSGGLGGLQHNTVLVGWPRNWRQKEDHQTWRNFIELVRETTAGHLALLVTKNVSMFPGN PERFSEGSIDVWWIVHDGGMLMLLPFLLRHHKVWRKCKMRIFTVAQMDDNSIQMKKDLTTFLYHLRITAE VEVVEMHESDISAYTYEKTLVMEQRSQILKQMHLTKNEREREIQSITDESRGSIRRKNPANPRLRLNVPE ETACDNEEKPEEEVQLIHDQSAPSCPSSSPSPGEEPEGERETDPEVHLTWTKDKSVAEKNKGPSPVSSEG IKDFFSMKPEWENLNQSNVRRMHTAVRLNEVIVNKSRDAKLVLLNMPGPPRNRNGDENYMEFLEVLTEQL DRVMLVRGGGREVITIYS
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