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Report for CCDS27717.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
27717.1 |
Public |
Mus musculus |
15 |
Fam118a |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:73225](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:27717.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:73225](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 15 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 27717.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000023069.8 |
ENSMUSP00000023069.7 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000023069.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000023069.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000023069](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000023069](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000229203.1 |
ENSMUSP00000154985.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000229203.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000154985.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000229203](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000154985](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001356616.1 |
NP_001343545.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001356616.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001343545.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001356616](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001343545](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001343545.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_133750.4 |
NP_598511.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_133750.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_598511.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_133750](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_598511](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_598511.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 27717.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1074 nt): ATGGAGTCAGTGGAAAAGACCACGAACAGAAGTGAGCAGAAATGCAGAAAGTTTTTAAAGAGCCTCATTA GAAAGCAACCCCAGGACCTGCTCTTGGTCATTGGGACTGGCGTGAGCGCAGCTGTGGCCCCAGGCATCCG AGCGCTCTGCTCTTGGAGGAGCTGCATTGAGGCGGTCATCGAGGCTGCGGAGCAGCTGGAGGTTCTGCAC CCTGGCGACGTTGCTGAGTTCCGGAGGAAGGTGATGAAGGATCGGGACCTGCTGGTTGTGGCCCATGATC TGATCCGGAAGATGTCACCTCGCACAGGCGACACCAAGCCCAACTTCTTCCAGGATTGCCTGATGGAGGT GTTTGACAGCTTGGAGCAGCACATTCAGAACCCGGTGGTGCTGCGGTCCATCCTCAGCCTGATGGACAGG GGCACCATGGTGCTGACCACCAACTACGACAACCTGCTGGAGATCTTCGGGCAGCAGCAGAGCAAGCCCA TGGAGTCCTTGGACTTGAAGGATAAGACGAAGGTTCTTCAGTGGGCAAGAGGCCATATTAAGTATGGAGT TCTTCATATTCATGGTTTGTACACGGACCCCTGTGGGATGGTGCTGGATCCATCGGGCTATAAAGATGTC ACTCAAGATCCGGAAGTCATGGAAGTCCTGCAAAATCTCTACCGAACCAAGTCATTCCTGTTCGTGGGCT GTGGCGAGACACTTCGGGACCAGATATTCCAGGCGCTCTTCTTGTACTCCGTGCCAAATAAGGTGGACTT GGAGCACTACATGGTAGTGCTCAAGGAAAACGAAGACCATTTCTTTAAGCATCAGGCAGATATGCTTTTG CATGGAATTAAAGTGGTGTCCTACGGGGACTGTTTTGACCTTTTCCCGGGATATGTGCAAGACCTTGCCA CTCAGATCTGCAAGCAGCGAAGTCCAGATGCTGAGCGAGTGGACAGCACCACCTTACTGGGTAATGCATG TCAGGACTGTGCAAAGAGGAAGTTGGAAGAGAATGGAATTGAAGTCACAAAAAAAGTTAGACAGTCAGAT ACTGATGATGCTGGAGGGTCTTGA
Translation (357 aa): MESVEKTTNRSEQKCRKFLKSLIRKQPQDLLLVIGTGVSAAVAPGIRALCSWRSCIEAVIEAAEQLEVLH PGDVAEFRRKVMKDRDLLVVAHDLIRKMSPRTGDTKPNFFQDCLMEVFDSLEQHIQNPVVLRSILSLMDR GTMVLTTNYDNLLEIFGQQQSKPMESLDLKDKTKVLQWARGHIKYGVLHIHGLYTDPCGMVLDPSGYKDV TQDPEVMEVLQNLYRTKSFLFVGCGETLRDQIFQALFLYSVPNKVDLEHYMVVLKENEDHFFKHQADMLL HGIKVVSYGDCFDLFPGYVQDLATQICKQRSPDAERVDSTTLLGNACQDCAKRKLEENGIEVTKKVRQSD TDDAGGS
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