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Report for CCDS90535.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
90535.1 |
Public |
Mus musculus |
9 |
Or10d5j |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:258364](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:90535.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:258364](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 9 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 90535.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000213171.1 |
ENSMUSP00000150077.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000213171.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000150077.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000213171](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000150077](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000217630.1 |
ENSMUSP00000150494.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000217630.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000150494.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000217630](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000150494](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000217360.1 |
ENSMUSP00000151213.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000217360.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000151213.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000217360](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000151213](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001360353.1 |
NP_001347282.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001360353.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001347282.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001360353](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001347282](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001347282.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 90535.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (945 nt): ATGAGCATGAGGAACCACACCTCTGTGACAGAGTTCATCCTGCTGGGAATTTCCAACACTGAAGGACTAG AGAGCATGCTGTTTGCCTTGTTCCTGGTCTTTTATGTCTTTGCCTTGTTGGGAAACCTGCTCATCTTCCT CACCATCCTGGCTTCTCCCAACCTCCACACCCCCATGTATTTCTTCCTGGGGAACCTGGCAGTGTTTGAC ATATTCTTCCCTTCTGTGAATTCTCCTAAGATGATGGACTACCTAGTACGGCAAGGCCGAACCATCTCAT ACCAGGGTTGTGCCTCACAGATTTTCTTCTATCACACCCTGGGCTGTACTGAGTGCTTCCTGTATACAGT GATGGCTTATGACCGCTTTGTGGCTATTTGTTACCCTATGAGATATACGGTCATCATGAACCCCAGGGTG TGTACCTGCTTTACAGTGGGCACTTGGCTGGGGGGCTTTGTCCATGGGAGCATCCTCACATTTCTTATCT TTAAGTTACCCTACTGTGGCCCCAATGAGGTAGACAGTTTCTTCTGTGACATTCCTGTGGTGCTGTCCCT GGCATGTGCAGACACCTCCCTAGCGCAGACTGTGAGTTTTACTAATGTTGGCGTTGTTGCGCTCACATGT TTTCTCCTTGTTCTCACTTCTTACACTCGTATTGTTATCTCCATCCTGAAAATCCGTTCCTCAGAAGGAA GGCGCAGAGCCTTCTCGACCTGCAGTGCCCACTTCACATCCATTCTGTTGTTCTATGGTCCCGTGATTCT CGTGTATCTCAGACCTGCTTCTAGTCCCTGGCTGGATTCTGTTGTCCAGGTGTTTAATAATGTTGTCACC CCTTCCTTGAATCCTCTGATTTATTCTTTGAGAAACAAGGAAGTGAAATTAGCCCTGAGAAAGATGTTAA GTCAAGCAATGCAACCTTTGGGGTATAAGGAATAG
Translation (314 aa): MSMRNHTSVTEFILLGISNTEGLESMLFALFLVFYVFALLGNLLIFLTILASPNLHTPMYFFLGNLAVFD IFFPSVNSPKMMDYLVRQGRTISYQGCASQIFFYHTLGCTECFLYTVMAYDRFVAICYPMRYTVIMNPRV CTCFTVGTWLGGFVHGSILTFLIFKLPYCGPNEVDSFFCDIPVVLSLACADTSLAQTVSFTNVGVVALTC FLLVLTSYTRIVISILKIRSSEGRRRAFSTCSAHFTSILLFYGPVILVYLRPASSPWLDSVVQVFNNVVT PSLNPLIYSLRNKEVKLALRKMLSQAMQPLGYKE
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