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Report for CCDS29566.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29566.1 Public Mus musculus 19 Asrgl1 23 108 98 CCDS HistoryNCBI Gene:66514Re-query CCDS DB by CCDS ID:29566.1Re-query CCDS DB by GeneID:66514See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29566.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049948.5 ENSMUSP00000051709.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049948.5Link to Ensembl Protein Viewer:ENSMUSP00000051709.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000049948Re-query CCDS DB by Protein ID:ENSMUSP00000051709
Original member Current member NCBI NM_025610.3 NP_079886.2 Accepted alive Link to Nucleotide Sequence:NM_025610.3Link to Protein Sequence:NP_079886.2Re-query CCDS DB by Nucleotide ID:NM_025610Re-query CCDS DB by Protein ID:NP_079886Link to BLAST:NP_079886.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079886.2 326 Q8C0M9 326 100% 0 0

Chromosomal Locations for CCDS 29566.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 9113000 9113208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9114184 9114294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9116502 9116620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9118529 9118686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9119188 9119330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9134787 9134987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9135515 9135554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGCGTGCGCCCGCGGCACCGTGGCGCCGCCAGTCCGAGCCTCCATCGATGTGAGTCTCGTGGTGGTAG
TC
CATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGC
G
GCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACT
GTC
CTGGAAAACGACCCAGAGTTCAACGCAGGTTATGGGTCTGTCCTGAATGTAAACGGTGATATTGAGA
TG
GATGCTAGTATCATGGATGGGAAGGACCTGTCTGCAGGTGCAGTGTCTGCCGTGCGCTGTATCGCAAA
T
CCCGTTAAACTTGCACGGCTTGTTATGGAAAAGACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAG
AAA
TTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGC
AC
CTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAAAAACTCAGGAACTGTGGG
T
GCTGTTGCCTTGGACTGCAGAGGAAACTTGGCTTACGCAACCTCTACTGGGGGGATTGTCAATAAAATG
GTT
GGCCGAGTTGGAGACTCGCCTTGCATAGGAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTT
CA
ACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCA
A
GGAAAGACCGTAGAGGAGGCTGCTCAGTTGGCATTGGATTACATGAAGTCAAAACTCAAAGGTCTAGGT
GGC
CTCATCTTGGTCAACAAAACAGGAGACTGGGTGGCAAAGTGGACCTCTGCCTCCATGCCCTGGGCAG
CG
GTGAAGAATGGCAAGCTGCAGGCCGGCATTGACCTCTGTGAGACCAGGACAAGGGACCTACCTTGCTA
G


Translation (326 aa):
MACARGTVAPPVRASIDVSLVVVVHGGGASNISANRKELVREGIARAATEGYKILKAGGSAVDAVEGAVT
V
LENDPEFNA
GYGSVLNVNGDIEMDASIMDGKDLSAGAVSAVRCIANPVKLARLVMEKTPHCFLTGHGAE
K
FAEDMGIPQVPVEKLITERTKKHLEKEKLEKGAQNADCP
KNSGTVGAVALDCRGNLAYATSTGGIVNKM
V
GRVGDSPCI
GAGGYADNNLGAVSTTGHGESILKVNLARLALFHVEQGKTVEEAAQLALDYMKSKLKGLG
G
LILVNKTGDWVAKWTSASMPWAAVKNGKLQAGIDLCETRTRDLPC




Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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