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Report for CCDS12842.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
12842.2 |
Public |
Homo sapiens |
19 |
ZNF577 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:84765](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:12842.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:84765](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 19 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 12842.1 |
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript data. |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 12842.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000301399.12 |
ENSP00000301399.5 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000301399.12](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000301399.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000301399](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000301399](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000638348.2 |
ENSP00000491936.2 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000638348.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000491936.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000638348](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000491936](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001370447.1 |
NP_001357376.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001370447.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001357376.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001370447](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001357376](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001357376.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001370448.1 |
NP_001357377.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001370448.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001357377.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001370448](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001357377](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001357377.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001370449.1 |
NP_001357378.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001370449.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001357378.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001370449](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001357378](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001357378.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_032679.3 |
NP_116068.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_032679.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_116068.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_032679](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_116068](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_116068.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 12842.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1458 nt): ATGAAAAATGCCACGATTGTAATGTCTGTGAGGAGAGAGCAAGGCAGTTCTTCAGGGGAGGGGTCATTGT CATTCGAAGATGTGGCTGTGGGCTTCACCAGGGAGGAGTGGCAGTTTTTGGACCAGTCTCAGAAGGTCTT GTACAAGGAAGTAATGTTGGAGAACTACATCAACCTAGTATCAATAGGGTATCGAGGCACCAAGCCAGAT TCGCTCTTCAAGTTGGAGCAAGGAGAACCCCCAGGGATAGCAGAAGGAGCAGCCCACAGTCAAATCTGTC CAGGTTTTGTAATCCAGAGTAGAAGATATGCAGGAAAAGATTCTGATGCATTTGGTGGATATGGGAGATC ATGCCTCCATATCAAGCGTGACAAAACTCTTACTGGAGTTAAATACCATAGATGTGTTAAACCCAGCAGC CCTAAATCACAGCTCAATGACCTACAAAAAATTTGTGCAGGAGGGAAACCACATGAATGCAGTGTGTGCG GGAGAGCCTTCTCCAGGAAAGCACAGCTTATTCAACATCAGAGAACTGAAAGAGGAGAGAAACCCCATGG ATGTGGTGAATGTGGGAAAACATTCATGAGGAAGATTCAGCTCACTGAGCATCAGAGAACTCACACAGGA GAGAAGCCCCATGAATGTAGTGAATGTGGAAAAGCCTTCTCCAGAAAGTCACAGCTCATGGTCCATCAGA GAACCCATACAGGAGAGAAACCCTACAGATGCAGCAAATGCGGAAAAGCCTTCAGCCGGAAGTGCCGGCT CAATAGACATCAGCGATCACATACTGGAGAGAAACTCTATGGGTGCAGTGTGTGTGGGAAAGCCTTTTCT CAGAAGGCATACCTCACTGCACACCAGAGACTTCACACAGGAGATAAGCCTTATAAATGCAGTGATTGTG GAAGAACCTTCTATTTTAAGTCAGACCTGACCAGACATCAGAGGATTCATACGGGAGAGAAACCTTATGA ATGTAGTGAGTGTGAAAAAGCCTTTAGAAGCAAGTCGAAGCTCATTCAGCATCAGCGTACTCACACTGGA GAGAGACCATATTCATGCAGAGAATGTGGCAAAGCCTTTGCCCACATGTCAGTCCTCATTAAACATGAGA AAACTCACATAAGAGAGACAGCCATAAATTCACTGACGGTGGAGAAACCTTCCTCAAGGAGTCATACCTC CTTATACATGAGCGAACTCATACAAGAGCAAAAGACTGTGAACACAGTACCTATAGAAATGCCTTCCTCA GGAACCCCGCCATTGTTAAACAAGAGTGAGCGCCTAGTGGGCAGAAATGTAGTGATTGTGGAACAACCTT TTCCAAGAAATCAAGCCTTTGTAGTTAATCAGGAATTTGAACAGAGAATAAGCCTCACAAATGAAGTGAA TGTGGCCCCATCAGTAATAAATTATATCTTGTATCTTACAGATATTGTATCAGAATAA
Translation (485 aa): MKNATIVMSVRREQGSSSGEGSLSFEDVAVGFTREEWQFLDQSQKVLYKEVMLENYINLVSIGYRGTKPD SLFKLEQGEPPGIAEGAAHSQICPGFVIQSRRYAGKDSDAFGGYGRSCLHIKRDKTLTGVKYHRCVKPSS PKSQLNDLQKICAGGKPHECSVCGRAFSRKAQLIQHQRTERGEKPHGCGECGKTFMRKIQLTEHQRTHTG EKPHECSECGKAFSRKSQLMVHQRTHTGEKPYRCSKCGKAFSRKCRLNRHQRSHTGEKLYGCSVCGKAFS QKAYLTAHQRLHTGDKPYKCSDCGRTFYFKSDLTRHQRIHTGEKPYECSECEKAFRSKSKLIQHQRTHTG ERPYSCRECGKAFAHMSVLIKHEKTHIRETAINSLTVEKPSSRSHTSLYMSELIQEQKTVNTVPIEMPSS GTPPLLNKSERLVGRNVVIVEQPFPRNQAFVVNQEFEQRISLTNEVNVAPSVINYILYLTDIVSE
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