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Report for CCDS53156.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53156.1 Public Mus musculus X Nhsl2 23 108 98 CCDS HistoryNCBI Gene:100042480Re-query CCDS DB by CCDS ID:53156.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53156.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101339.7 ENSMUSP00000098893.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101339.7Link to Ensembl Protein Viewer:ENSMUSP00000098893.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000101339Re-query CCDS DB by Protein ID:ENSMUSP00000098893
Original member NCBI NM_001163610.1 NP_001157082.1 Updated not alive Link to Nucleotide Sequence:NM_001163610.1Link to Protein Sequence:NP_001157082.1Re-query CCDS DB by Nucleotide ID:NM_001163610Re-query CCDS DB by Protein ID:NP_001157082
Current member NCBI NM_001163610.2 NP_001157082.1 Accepted alive Link to Nucleotide Sequence:NM_001163610.2Link to Protein Sequence:NP_001157082.1Re-query CCDS DB by Nucleotide ID:NM_001163610Re-query CCDS DB by Protein ID:NP_001157082Link to BLAST:NP_001157082.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157082.1 1219 B1AXH1 1219 100% 0 0

Chromosomal Locations for CCDS 53156.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 101849568 101849847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102071324 102071479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102073352 102073479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102073782 102073974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102076162 102076293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102077482 102079797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102081689 102081821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102082606 102082927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3660 nt):
ATGCCGTTCTACCGGCGCACTGTGGTGCCCCAGCGTCTGTGCCCGCGCAACCCTCCGCAGCCGCTGGCTG
AGCTCCGCGACGTGAGCCACCTGGCCGCGCTCAGTCTGCTCCGCCAGCTCGCAGACCTCTGCGGCCACTC
GCTGGCTCTGCTGGAGGACCTCGAGGGGCACCTGCTGGCTCTGGGGCGCCGCACCGACAGCCTGTACCGG
CGCACCGTCCGGCTCCGCCGCCGCCTTCCCTGTCGCCTGCTTGGCCCGGAGGATGATGAAGAATTGCTAG
CTGCAGCTAACTCGGGTCGGGAAAATGCGACAGCGACTGCCCACTCGAGGTCGTCATGGCGACAGCCAGT
GAACGTGTTCCTCTCCTCGGGCAGGCCCCCGAGTGTAGAGGAACTGCTTCGCGAGGCGCAGCTCAATCTC
CAGAGCCTGTTGCAAGAAGAATATGAGGAACAGTATTCGGAGGCCAGACTTCTGGGGCAGACCTTCCGCT
CTTCTGATGGGGCCCCTGAGCCTACTCCCAGCCCAAGGCCCCAGTCTGCCAAGCGTCTGGAGTTTGTACT
GATGCCTGCAAAACGGCAGCTGAGCGAGGATGAGACCACGACCCAGGGTGTGAGGGCCCCTGAGGCCTGC
CTGAGCCTGTCTACTGCCAACAAGCAAAGTGCCTGGAATGACCCCTTCCCTCTACCCATCCTAAAGGAGA
GGCTCTGGCTTCAGCCCTGCTCCACACAGTCTGACCTTGTGCCAATCAACATCTCTGGGCAGCAGTTTGA
TAGACATGCAAGTTTTCGACACTCGTTGTTTAACACAGAGACAGCCGTGAACCCCAAGTCCACCCTGAGG
CGGAGGCGGACCATTATTGGATTCTCTAACTTTTCTCAGCGAGACCAAGGTCACAGCAGCAGCCCCACAG
GCAGCCTGGCCCGCTCTGCCACCTCAGACATCAGGCCTGGCCACTCAGCTCCACAAGTTGTTCAGGGAAG
AGTTGCTGTTGGGCAGGAAGCTCGGTTCCCAAGTCTCACCTCACCAGGACTGAGACACTCTTCTAGTGAG
CCCGGAGACGCTCACCAGGCACGCAGTGCCTCAGACCATCCCGGCATGGAGAGCATGGCAGTGGTGTACA
GTGTCCCCAGTTCTTGCAATGGACCAACAGAGTCAACATTCTCCACTTCCTGGAAGGGAGATGCTTTCAC
ATACATGACCCCAAGTGCCAGCAGCCAGGGCAATCAAGTCAGTGAAAATGGAAAAAACCCTTCCTCGGGC
AATTCTTGGGTCCCTCTGAACACACTCCCACCTCTGGTTCCTAAGGAGGCGGCCACGCTCTTTGTCACCC
GTGATAACCCAGCAGGATGCACTGGGCTACCCAGCTACTCTGAGCACCCCACTCTACGAAGACAGATACC
AGAAAGACCTCCCAAGATTGGCCTTCTTGCCCGTGGTACCTCAAGGCTGGAAACAGGCCCAGGTGGGACC
AACAGGTTCCGGGAGCGGTCACTGTCTGTACCCACAGACTCGGGTGTTACCTCAGTGGACTATGACGAAG
AACAGAAGACCAGTGAGACCCGCATCCTGCCTTATGCCAGTACAAGCTCCGAGGGCAGTAACAGTACTGA
CAACATTGCAGCCCTCAGCACTGAGCAGGAGGCACGGCACAGAAGGCAAAGATCCAAAAGTATTTCACTC
AAGAAGGCCAAAAAGAAGCCCTCTCCACCCATGCGAAGTGTCTCACTCGTCAAAGATGAGCCAGCCCTCC
CACCAGAAGGCGAATTGGTACTGCCCAAGGACCAGAGGCCTAGGAGCCTTTGCCTCTCCTTGGAACACCA
AGGGCACCACCCACCTCACCCAGATGCTCAAGGTCACCCAGCTGTGCCAATGCTCAAAGATCCAGGAAGT
ACGCAGTTCTCTCACCACTGGTATCTTACTGACTGGAAGTCTGGTGACACCTACCAGTCCTTGTCCAGCT
CCAGCACTGCCACCGGCACCACGGTCATTGAGTGCACTCAAGTTCAGGGAAGCTCAGAGTCTCTGGCCTC
CCCTTCCACCTCCAGAGCGACAACACCCTCCCAGCTCTCCATTGAGGTGGAAGCCAGGGAAGTAGCCTCT
CCTGGGAGGCCCACTGGACTGATGTCCCCTTCCAGTGGTTACTCCAGCCAGTCAGAGACACCCACACCCA
CTGTCTCCATGTCCTTGACCCTGGGCCACTTACCTCCTCCAAGTGCTAGTGTCAGAGTACGTCCAGTGGT
ACCAGAAAGGAAGTCATCACTGCCCCCAACATCACCAATGGAGAAAATCTGCAAGTCACGGTTATCATTT
GACCTACCACTGACCTCTTCAACCACCCTGGATCTGTCGGGGATGAGTATCTCCATCCGCAGCAAAACCA
AGGTGAGCCGCCATCACTCTGATACCAATTTTGGGGTCAAACTGGCACAGAAAACTAGTCCAAACCAACC
GATCATGCCCATGGTTACTCAGTCTGACCTCCGTTCTGTTCGCCTGAGGTCAGTCAGCAAGTCTGAGCCA
GAAGACGACATTGAGAGTCCAGATTACATAGAGGAACCTGGAGCAGAGGAAGTCTTCACCATGCCAGAGA
GAAAAGTGAAACCTCCCATAGCCGAGAAACCTCCATTGGCCCGAAGGCCTCCAAGTTTGGTCCACAGGCC
GCCCTCTCTCCCTGGGGAGTATCCACTAACTTCTCCTACTATGGCTATGGCATCCAGGAGCTCCATTCCA
CACATGAAGCAGCTTCCCCAAGACAGCTACACAGTGTTGCGGAAACCAAAGTCACCCAGCTTCCCCGGGG
AGTCAACAGCATCCTCCAGCCTTGTCCTCTCACCTCTTGCCAGTTCCTCTGGTGCTTTCTTCTCAGGAAC
ACAGCAACCTCCCCAGGCCAGTGTAGAAGACGGGGGCCCCAAGGTGAGAGCCCTGCCTGAAAGAATCGGC
CTCCAGAGCCAGGAAGAAGCTGAGAAAAAGATGACCAAGATTCCACCTCCGGTACCAAAAAAGCCCAGTG
TGCTCTACCTGCCTCTCACCTCCCCTGTAGCTCAAATGGATGCCTGCATGGCAGAACCAAGGCTACCTTT
CAGCCCCATCATCACCCTGGAGGAAGATGGCAAGTGTCCCTCCACTGGTGATGACCAGAAGTCACCTGGT
AAAGGGGTGACTTCGCCTCTTCACACTGACACAGAAAAAGAGGCCATCTCTCCAGGGAGGTCAGTGGAAC
CGAGTGCTGAAGAGAAAAGTTTAATCAGTGATAAAACAGCCGAATGGATTGCAGAGGAGGAGGATGACGT
GTTTGTGGCTTCCCGCACAACTGAAGATTTATTTACTGTGATACACAGGTCCAAAAGAAAGCTACTGGGC
TGGAAAGAGACTGGGGAGGGCTTCACGGGAAGCAAACCCAGCTCCCATTCACCAGTGAAGAATACAGCTG
ATTCTCCCACCGGTGAGGCTGCTGCTGCCCCAGGGCCAAGTAGCAGTGCCTGCCTAGATGCTGGTAGAAA
TGATGATTTCAAGGCCTTGCTCCAGAAGAAGGGAAGTAAGGCAACTCCCAGGACCCGCCCCTCAGCGGCC
GAGCTGCTGAAGACCACTAACCCTCTGGCTCGAAGGATTATTGCACAGTTCTCAAAAGACTACGAACCCA
CTGACAACCCCAGTACCTAA

Translation (1219 aa):
MPFYRRTVVPQRLCPRNPPQPLAELRDVSHLAALSLLRQLADLCGHSLALLEDLEGHLLALGRRTDSLYR
RTVRLRRRLPCRLLGPEDDEELLAAANSGRENATATAHSRSSWRQPVNVFLSSGRPPSVEELLREAQLNL
QSLLQEEYEEQYSEARLLGQTFRSSDGAPEPTPSPRPQSAKRLEFVLMPAKRQLSEDETTTQGVRAPEAC
LSLSTANKQSAWNDPFPLPILKERLWLQPCSTQSDLVPINISGQQFDRHASFRHSLFNTETAVNPKSTLR
RRRTIIGFSNFSQRDQGHSSSPTGSLARSATSDIRPGHSAPQVVQGRVAVGQEARFPSLTSPGLRHSSSE
PGDAHQARSASDHPGMESMAVVYSVPSSCNGPTESTFSTSWKGDAFTYMTPSASSQGNQVSENGKNPSSG
NSWVPLNTLPPLVPKEAATLFVTRDNPAGCTGLPSYSEHPTLRRQIPERPPKIGLLARGTSRLETGPGGT
NRFRERSLSVPTDSGVTSVDYDEEQKTSETRILPYASTSSEGSNSTDNIAALSTEQEARHRRQRSKSISL
KKAKKKPSPPMRSVSLVKDEPALPPEGELVLPKDQRPRSLCLSLEHQGHHPPHPDAQGHPAVPMLKDPGS
TQFSHHWYLTDWKSGDTYQSLSSSSTATGTTVIECTQVQGSSESLASPSTSRATTPSQLSIEVEAREVAS
PGRPTGLMSPSSGYSSQSETPTPTVSMSLTLGHLPPPSASVRVRPVVPERKSSLPPTSPMEKICKSRLSF
DLPLTSSTTLDLSGMSISIRSKTKVSRHHSDTNFGVKLAQKTSPNQPIMPMVTQSDLRSVRLRSVSKSEP
EDDIESPDYIEEPGAEEVFTMPERKVKPPIAEKPPLARRPPSLVHRPPSLPGEYPLTSPTMAMASRSSIP
HMKQLPQDSYTVLRKPKSPSFPGESTASSSLVLSPLASSSGAFFSGTQQPPQASVEDGGPKVRALPERIG
LQSQEEAEKKMTKIPPPVPKKPSVLYLPLTSPVAQMDACMAEPRLPFSPIITLEEDGKCPSTGDDQKSPG
KGVTSPLHTDTEKEAISPGRSVEPSAEEKSLISDKTAEWIAEEEDDVFVASRTTEDLFTVIHRSKRKLLG
WKETGEGFTGSKPSSHSPVKNTADSPTGEAAAAPGPSSSACLDAGRNDDFKALLQKKGSKATPRTRPSAA
ELLKTTNPLARRIIAQFSKDYEPTDNPST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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