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Report for CCDS51374.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51374.1 Public Mus musculus 4 Rex2 23 108 98 CCDS HistoryNCBI Gene:100043034Re-query CCDS DB by CCDS ID:51374.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51374.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075775.5 ENSMUSP00000075179.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075775.5Link to Ensembl Protein Viewer:ENSMUSP00000075179.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000075775Re-query CCDS DB by Protein ID:ENSMUSP00000075179
Original member Current member NCBI NM_001177767.1 NP_001171238.1 Accepted alive Link to Nucleotide Sequence:NM_001177767.1Link to Protein Sequence:NP_001171238.1Re-query CCDS DB by Nucleotide ID:NM_001177767Re-query CCDS DB by Protein ID:NP_001171238Link to BLAST:NP_001171238.1

Chromosomal Locations for CCDS 51374.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 147052516 147052590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147055599 147055725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147057259 147059114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGTTTGCTCCTCACCAAGAATCTGGGAGAAGAACAACTAAAAGAATGAGTGCTTCTCTGGAAAACACTG
CACAGTGTCTATTAACCTTCAAGGACGTGTTTTTGGACTTCTCATCGGAGGAATGGGAATGTCTCAATTT
TGCTCAGAGGACATTGTACATGGATGTGATGTTGGAGAATTACAACAATCTGTTGTTTGTGGAAAATCAC
TGCATATGTGGAAACTATGAGAAGGAGAAGGTCTTGGAACAAGACACACAGCACATTGTCAATGAGCATG
GGCATAACCGAAAGAAGTCTTCTAAATGTAATGAGCTTAGAAATGTGATCCATGAATCCTCCGAAAGTAC
ACCTTATAACACTAACCACAGAGATGCCACTCTCCAATCCTCAAACCTAAAAAGACATAAAACTGGGACC
ACTAAAGGAGTTTGCACATATAAAGACTGTGTAAACTGTTTAAAGGGGTCTTCTATCATTAGTCTCAATC
AAGGAACCCACATAGAGAAGAAAGAACACAACAGAAATAAAAATCTTGATGAGGTTTTGGTTTCTAGACA
AAACAATAGTGAAATGAACACTTACACTTGTGGTGAATTTGACAAATGCTTTACTCAGAGTGACAATCTT
CAAAGTCAGCAGAGAATTTATCCAGGAAAGAAATCTTACAAATATAGTGAAAGTGACAAATGCTTTACCC
AAACTTCCCATCTTAGTATTCATCATACAATTCATTCAGGAGAGAAACCTTACAAATGTAGTGAATGCGA
CAAATGCTTTACTGACAAATGCACTCTGAGAAAGCATCAGAGAATTCATACAGGAGAGAAACCTTACAAA
TGTAGTGAATGCGACAAATGCTTTACTGACAAATGCACTCTGAGAAAGCATCAGAGAATTCATACAGGAG
AGAAACCTTATAAATGTAATGAATGTGACAAATGCTTTACTGACAAAGGCAGTCTGAGAGTTCATCAGAG
AATTCATACAGGAGAGAAACCTTACAAATGCAGTGAGTGTGACAAATGCTTTACCCAACCATCCCATCTT
AGTATTCATCGTAGAATTCATTCAGGAGAGAAACCTTACAAATGTAGTGAATGCGACAAATGCTTTACTG
ACAAATGCACTCTGAGAAAGCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGCGA
CAAATGCTTTACTGAGAAATTCACTCTGAGAAAGCATCAGAGAATTCATACAGGAGAGAAACCTTACAAA
TGTAATGAATGTGACAAATGCTTTACTGACAAAGGCAGTCTGAGAGTTCATCAGAGAATTCATACAGGAG
AGAAACCTTACAAATGCAGTGAGTGTGACAAATGCTTTACCAAACCATCCCATCTTAGTATTCATCGTAG
AATTCATTCAGGAGAGAAACCTTACAAATGTAGTGAATGCGACAAATGCTTTACCCAACCATCCCCTCTC
AGTATTCATCGTAGAATTCATTCAGGAGAGAAACCTTACAAATGTAGTGAATGCGACAAATGCTTTACTG
ACAAAGGCAGTCTCAGAGTTCATCAGAGAATTCATATAGGAGAGAAACCGTACAAATGCAGTGAGTGTGA
CAAATGCTTTACCCAACCATCCCATCTTAGTATTCATTGTAGAATTCATTCAGGAGAGAAACCTTACAAA
TGTAGTGAATGTGACAAATGCTTTACTCACAAAGGCTCTCTGAGAGTTCATCATAGAATTCATGCAGGAG
AGAAACCTTACAAATGTAGTGAATGTGACAAATGTTTTACTGAGAAAAACGGTCTGAGAAGGCATCAGAG
AATTCATACAGGAGAGAAACCTTATAAATGCAGTGAATGTGACAAATGCTTTACCCGAAAATCACATCTT
AGTATTCATCAGAGAATTCATACAGGAGAGAAACTGTACAAATGCAGTGAATGTGACAAATGCTTTACCC
AACAATGCCATCTTAGTATTCATCAGAAAATTCATTCAGGAGAGAACCTTACAAATGCAATGAATGCGAC
AAATGCTTTAGTGACAAACACAGTCTGA

Translation (685 aa):
MFAPHQESGRRTTKRMSASLENTAQCLLTFKDVFLDFSSEEWECLNFAQRTLYMDVMLENYNNLLFVENH
CICGNYEKEKVLEQDTQHIVNEHGHNRKKSSKCNELRNVIHESSESTPYNTNHRDATLQSSNLKRHKTGT
TKGVCTYKDCVNCLKGSSIISLNQGTHIEKKEHNRNKNLDEVLVSRQNNSEMNTYTCGEFDKCFTQSDNL
QSQQRIYPGKKSYKYSESDKCFTQTSHLSIHHTIHSGEKPYKCSECDKCFTDKCTLRKHQRIHTGEKPYK
CSECDKCFTDKCTLRKHQRIHTGEKPYKCNECDKCFTDKGSLRVHQRIHTGEKPYKCSECDKCFTQPSHL
SIHRRIHSGEKPYKCSECDKCFTDKCTLRKHQRIHTGEKPYKCSECDKCFTEKFTLRKHQRIHTGEKPYK
CNECDKCFTDKGSLRVHQRIHTGEKPYKCSECDKCFTKPSHLSIHRRIHSGEKPYKCSECDKCFTQPSPL
SIHRRIHSGEKPYKCSECDKCFTDKGSLRVHQRIHIGEKPYKCSECDKCFTQPSHLSIHCRIHSGEKPYK
CSECDKCFTHKGSLRVHHRIHAGEKPYKCSECDKCFTEKNGLRRHQRIHTGEKPYKCSECDKCFTRKSHL
SIHQRIHTGEKLYKCSECDKCFTQQCHLSIHQKIHSGENLTNAMNATNALVTNTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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