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Report for CCDS57146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57146.1 Public Mus musculus 19 Cfap43 23 108 98 CCDS HistoryNCBI Gene:100048534Re-query CCDS DB by CCDS ID:57146.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57146.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160247.2 ENSMUSP00000125007.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160247.2Link to Ensembl Protein Viewer:ENSMUSP00000125007.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160247Re-query CCDS DB by Protein ID:ENSMUSP00000125007
Original member Current member NCBI NM_027559.2 NP_081835.2 Accepted alive Link to Nucleotide Sequence:NM_027559.2Link to Protein Sequence:NP_081835.2Re-query CCDS DB by Nucleotide ID:NM_027559Re-query CCDS DB by Protein ID:NP_081835Link to BLAST:NP_081835.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081835.2 1682 E9Q7R9 1682 100% 0 0

Chromosomal Locations for CCDS 57146.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47737721 47737887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47738029 47738182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47738778 47738858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47739670 47739834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47745444 47745603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47746629 47746741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47747842 47748055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47751068 47751156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47751827 47751913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47752965 47753072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47756002 47756121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47760859 47760984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47761637 47761717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47761942 47762034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47763641 47763847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47765800 47766030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47770380 47770496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47771556 47771660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47773023 47773148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47776020 47776097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47778394 47778477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47780261 47780411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47782279 47782409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47785280 47785429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47786921 47787096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47788312 47788452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47791419 47791522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47795603 47795751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47797109 47797189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47801863 47801979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47812068 47812199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47813928 47813995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47815813 47815972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47823029 47823179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47825762 47825929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47830384 47830480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47835564 47835817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47837215 47837327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5049 nt):
ATGTCGCAAGACCCGGAGCGCGACGACGTCACTGCCTCTGCCACTGCCTCTGCCTCAGCCTCAGCCCCTG
CCTCTGCCTCTGCCCACTACTCCGGATCCTCCCTGTCGGTGAGATGGGTGCAAGGATTCCCTAGTCAGAA
CGTCCACTTTGTCAATGACCAGACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAA
ACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATTGTGGGCGTCATGGCAACTAATGTGCCCAGTG
AAGTCGTGGCTTTCTCTGACCGAAGATTTAAACCTGTTATCTACATATACAGCTTCCCATCGCTGACCAG
AAAAAACAAGTTAAAAGGTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGCACCTAC
CTGGCCAGTTACTCGTCTCTCCCAGAGTTTGAGCTGGCCCTCTGGAACTGGGAAGCCAGTGCCATCTTGT
GCAAGAAATCAAATCCCGGCATGGATGTGAGCCAGATGTCCTTCAACCCCATGAACTGGCACCAAATGTG
TTTATCAAGTTCAAGTGCGATGAGCGTGTGGACCATTGAGAGAAGTAACCAGGAGCACCATTTCAGGATA
AGGTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTC
TGCCAAAGGATCTCATTTATGGACCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGC
AGAGACTTTCAGGCCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCA
AGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCG
TGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGGATGGAGCCCCGCTCATCAACCCACTCACGCTGGTGTA
CCAAAAGGACGGCATACTCGCTTCTGGAATTGATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAG
TACCAAGTGAAGACCTTTCTCGAGTTTGATGGGCCGGTGACACATCTGGTGTTCTCCCCCAGTTACAAAA
TGTTACTGATTCAAACAGACAAGGGGTCTGTTTATATCTATACGTTTGGTGCAGAGATGCCTCTTGATAA
ACTCCTCGATGCCTGCGATGGGAAAGTGCAGGCTGTCAGCTTTATCACACCTGGAACCAAATACTTCCTG
ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCC
TGAAGACTCAAGCAACAGCTCTGGCGTGCTCCCCTTCCTCGCCGACAGCTGCCGTGGGGACGGTGGATGG
CTATGTCTACTTTCTGAACATCCTTGATGTGGAGTCCCCTCAGATGATCCACCAGGCCTTCCTCTCCCAG
TCACCAGTGAAGATAGTGACGTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACA
TCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTGAGACGGGCAAGGACAT
CCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCA
GATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAGTGGTTCCTGAAAACT
TTTCTGATGAACGAGGAAGGCTGAAAGACGATTTAACCCACAAGTACCTGTACGAGGTGGAGCACACTCT
GTCCTCTGCAGTGCTGGGCTTCACAGGCAGCAAAATCTTTGGCTTCTGCAGCCAGGTGCCCTACATCTGC
AGCTATGTAATGCCCGTAAAGGAACACACTGGTGTCCTTGTTCTTAAGCCTCACCAAAAAGTACAGAGCA
AACAGTACGGATCTGGAACAATCTATCTGTCTTCTCACGGATTATGGCTTATGACAATAGCTAAATGTGG
AATTCTCTGTATCCGAGATATGTTCAGTATGGAAACCTTTGTTCGATGTCGGAGTCATTCTCACCAGGGG
CGAGGGATCCAGAACATGAAAATGTCATTGGACGGACAGCACATCCTGGTGAATGGAAAAGATGACAACA
CCCTTGTCTGCCTCAAATGGAAGCGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCC
GCTAGTGCTCCATCTGTCCCAGACAGTGGAATCGGAGAGTGTATACTTAGCTTTATCGAGAGAGTCCACG
AATGAGCAGCAAGAAGAGACAACTGAATCCCAAAAACACCTGAACTCAGACTCATCAGAAGAGGAAGCAG
TCATCGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAGGCCATCAAAAAGGAGGTGAGGAT
TTTTTCCCCTAGAAGAAAGGAGATCAAAAGAGGAATTAAGGAGCTCGCTCAGGTTATTGCAATGATGATG
GAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGC
TGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAGATAAGGAAAGATGTGGAGATGCACAACTT
GGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCT
CTAAAGTGTTTTCATATACCCTATGTGGTTGACAACTTTCCCATGAAAGAGCGCACGGAAGAGGAGCTAC
AGGAGTTGAGTAAAGTTATGCAGCAAAAGAAGACTGAGATTGAGTGTCTTAAGCTCCGGAAAGAGATTGT
GGAGGTCCAGGCGACAACCACTATAGCTAAGAAACACCACGAGGAGGAGGAGGAGGAGGAAGAGGATGAA
GAAAGGACAATAAAAACTACCAGTCTGCCCAATTACCTGCTTGGTAGTTTGAGCACTGATTTTGGGGCGG
ACACATCTTTGTTGACAAGCCAACTGGACCTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCT
AAAGGATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAG
ATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAG
AAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGA
GATCTCATTTAAAAAATACATTGCTCCATGGCAAAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAA
ATGGAACGGTTGCAGCAAGCACGGATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTG
TTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATGGTGATCCCTCAACCACCTTTCATGGCGAAAGCTGA
TGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAA
GAGAGAGACAAGTACAGAAAGTCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCA
CGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCA
GGAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAG
TTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAAACCAAGACTGCAGAAGCCATCCAGAAGGCGA
GAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTGGCAGAGGACAAAATTCTGGATCGAAG
CTTCAAAAAGGAATTTTCTGACATTTTGGGTCACCAGGTGGATGTCCTCTACAAACTTTTTAAACGCCGG
CCAAGGGTTCACAAACAGAAAACACAGGCAGATGTGACCAGTCTTGTTCCTTATGGAGAGCGACCAGGAT
CTGCCAAGTTAAATAAGGAAAACTTAGCCCAGCTAATGAAATCCATGGATGAGTTGGACAATATCAATAA
CATGCCAGAAGGCTTGGACCCCTCTGTCTGGGAACATTTCTGCTCAACTAGACGGGCAAAAGTGGAAAAT
GAATACAAAGTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAG
AGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCCGATTACAGGATGAGAAAGT
GAGATTCCAGGTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAAGTAGAGCTGGAGAATTTCCAG
TTGATGCTGGAATATTCTGACGCAATTCTCATCAATAAGAATATAATTGAAGACTTGAATTCTGTGATTC
GGACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGAT
TGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATCGAGATG
CTCTTCTTCTCACGAGACCGGCAGAAGTACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGA
TTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAGACTCATAAGAAGAATGTAGAAAACTGCAAAAA
GCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTA
CGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAGGGTCTAAGCTGACCTGTG
AGAAGATTGCTAGAGAACGCTACGACAACCAGCTGAAGCAGCAGAAGCTGTTGAACATCTCCAAGCAGCA
AGCTGAGCAGATCTCAATCCTGCAGGCTGAAGTTGAAAGACTCAGGATGAAGACATTCCCTGCTCTCATC
CCAATGTAG

Translation (1682 aa):
MSQDPERDDVTASATASASASAPASASAHYSGSSLSVRWVQGFPSQNVHFVNDQTICYPSGNFVIFINLE
TKKKTVLQCINGIVGVMATNVPSEVVAFSDRRFKPVIYIYSFPSLTRKNKLKGDILLDYTLLCFSYCGTY
LASYSSLPEFELALWNWEASAILCKKSNPGMDVSQMSFNPMNWHQMCLSSSSAMSVWTIERSNQEHHFRI
RSVKLPLEDATFLNEPDMLFPTTLPKDLIYGPVLPLSAIAGLVGEEAETFRPKDDIYPLLHPTMHCWTPS
SDLYVGCEEGHLLMINTETLKVTVLQKAEEFPLPDGAPLINPLTLVYQKDGILASGIDGVIYSFIIKDSK
YQVKTFLEFDGPVTHLVFSPSYKMLLIQTDKGSVYIYTFGAEMPLDKLLDACDGKVQAVSFITPGTKYFL
TLTSSGEVSTVSLEDCNCTSRIFLKTQATALACSPSSPTAAVGTVDGYVYFLNILDVESPQMIHQAFLSQ
SPVKIVTYDQRGIFLLVGTEEGNIFVIDARPSKSFQIFGFTETGKDILQISTVSVMESDVVEVLVLYPLP
DMGRSRLEYFTLPVMLPEVVPENFSDERGRLKDDLTHKYLYEVEHTLSSAVLGFTGSKIFGFCSQVPYIC
SYVMPVKEHTGVLVLKPHQKVQSKQYGSGTIYLSSHGLWLMTIAKCGILCIRDMFSMETFVRCRSHSHQG
RGIQNMKMSLDGQHILVNGKDDNTLVCLKWKRLGANIASEIFEHSRPLVLHLSQTVESESVYLALSREST
NEQQEETTESQKHLNSDSSEEEAVIDHKMIPWIQQKMEEAIKKEVRIFSPRRKEIKRGIKELAQVIAMMM
EENEKVDIIAKLDEQEFCLDADELERLHDECEEEVAKIRKDVEMHNLAQSYLTELIKEECWNSMAVKGRA
LKCFHIPYVVDNFPMKERTEEELQELSKVMQQKKTEIECLKLRKEIVEVQATTTIAKKHHEEEEEEEEDE
ERTIKTTSLPNYLLGSLSTDFGADTSLLTSQLDLHSREEKINQIILLKDIIYNIKRNFNSEFDAAYKQKE
IEIARVKEKNVRIAEIISDLELEETVWQPVFEDSEKPERALVVEDDEISFKKYIAPWQRAKIKEVVSTYE
MERLQQARISDERQRGLMDMMGGVLEVKKEDILRMVIPQPPFMAKADALWSEDERKQFKEYEKKVKELNE
ERDKYRKSLEAELKKLQNSIQESTQNFDDHLKRLFERRVKAEMVINQEELKINNIIFSLLLDEELSSREQ
FLNNYLLKKQEEKTKTAEAIQKAREDLDVFKEHHDMLVAEDKILDRSFKKEFSDILGHQVDVLYKLFKRR
PRVHKQKTQADVTSLVPYGERPGSAKLNKENLAQLMKSMDELDNINNMPEGLDPSVWEHFCSTRRAKVEN
EYKVKQKAACLLEMTTFLRKRMEEDDVVHHEIEKVFHELIRLQDEKVRFQVNLTVQILLKQGQVELENFQ
LMLEYSDAILINKNIIEDLNSVIRTQGQKKVASMMESKEVHKGIYQIEWEHKKMEMEMEDLNQRAWDIEM
LFFSRDRQKYLNEPNYENVIAIQIGIMEQTISVIDKTHKKNVENCKKLLKKLGKYSNQKDVANYTLSCNL
REELVAVSERQDICNEIGSKLTCEKIARERYDNQLKQQKLLNISKQQAEQISILQAEVERLRMKTFPALI
PM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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