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Report for CCDS20572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20572.1 Public Mus musculus 6 Itfg2 23 108 98 CCDS HistoryNCBI Gene:101142Re-query CCDS DB by CCDS ID:20572.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20572.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001559.10 ENSMUSP00000001559.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001559.10Link to Ensembl Protein Viewer:ENSMUSP00000001559.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000001559Re-query CCDS DB by Protein ID:ENSMUSP00000001559
Original member Current member NCBI NM_133927.1 NP_598688.1 Accepted alive Link to Nucleotide Sequence:NM_133927.1Link to Protein Sequence:NP_598688.1Re-query CCDS DB by Nucleotide ID:NM_133927Re-query CCDS DB by Protein ID:NP_598688Link to BLAST:NP_598688.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598688.1 443 Q91WI7-1 443 100% 0 0

Chromosomal Locations for CCDS 20572.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 128410314 128410417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128410493 128410666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128411565 128411682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128412699 128412790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128412957 128413010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128413103 128413200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128413525 128413673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128414145 128414284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128415896 128416064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128416257 128416298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128417617 128417712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128424718 128424813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGAGGTCGGTTAGTTATGTGCAGCGCGTGGCGCTGGATTTCAGCGGGAGTCTCTTCCCGCACGCCATCT
GCCTCGGAGACGTGGATAACGACGCGTTAAATGAGCTAGTTGTGGGAGACACCAGCGGGAAACTGTCCGT
GTATAAGAATGACGACAGCCGGCCATGGCTTACCTGCATGTGCCAGGGAATGTTGACTTGTGTTGGGGTC
GGAGATGTCTGTAATAAAGGGAAGAACCTGGTGGTAGCAGTCAGCGCAGAAGGCTGGCTGCACTTGTTTG
ACCTGACACCCACCAAGGCTCTGGATGCCTCTGGGCACCATGAGACACTTGGAGAGGAGCAGCGACCTGT
CTTCAAGCAGCACATCCCGGCCAACACAAAGGTCATGCTGATCAGCGACATCGATGGAGATGGGTGTTAC
GAGCTGGTGGTAGGATACACAGACCGTGTGGTGCGGGCCTTCCGCTGGGAAGAACTGGCTGAGGGGCCTG
AACACCTGGCAGGGCAGTTGGTGTCCCTCAAGAAGTGGATGCTGGAGGGTCAGGTAGACAGTCTCTCTGT
GACCCCAGGGCCTCTGGGTGTGCCTGAGTTGGTTGTGTCGCAGCCAGGGTGTGCTTATGCAGTTCTGCTG
TGCACCTGGAACAAGGACACTGGCTCCCCTCCTGCCTCTGAGGAGGCCACAGGAGACAGTAGGGAGACCC
CAGCTGCCCGAGATGTAGTCCTGCACCAGACATCTGGCCGGATCCACAACAAGAACGTCTCCACTCACCT
AATTGGCAACATCAGACAAGGTCATAACCCTGAAGGTGGTAACGCAGGCCTCTTCGCCCTGTGCACCCTG
GATGGGACACTGAAGCTGATGCAGGAAGCAGACAAGTTGCTGTGGTCTGTGCAGGTGGATCACCAGCTTT
TTGCCCTAGAGAAGCTGGATGTCACGGGCAATGGGCTTGAGGAGGTGGTAGCTTGTGCCTGGGATGGACA
GACATATATCATCGATCACAACCGCACCGTTGTGCGCTTCCAAGTGGATGAAAATATCCGTGCCTTCTGT
GCAGGCCAGTACGCCTGCAAAGAGGGCCGCAACAGTCCCTGCTTGGTATATGTCACCTTCAATCAGAAGA
TCTACGTGTACTGGGAGGTGCAGCTGGAGCGCATGGAGTCCACTAACCTTCTGAAGCTGCTGGAGGCTGA
GCCCGAGTACCACCGCCTACTGCAGGAGCTGCGTGTGGATCCTGAAGATCTCCCTGCAGTCTGTACCCTG
CTTCATCAGACTCTCTACCATCCGGACCAGCCACTACAGTGTACCCCCTCAAGCTTCCAGGACCCCACCT
AG

Translation (443 aa):
MRSVSYVQRVALDFSGSLFPHAICLGDVDNDALNELVVGDTSGKLSVYKNDDSRPWLTCMCQGMLTCVGV
GDVCNKGKNLVVAVSAEGWLHLFDLTPTKALDASGHHETLGEEQRPVFKQHIPANTKVMLISDIDGDGCY
ELVVGYTDRVVRAFRWEELAEGPEHLAGQLVSLKKWMLEGQVDSLSVTPGPLGVPELVVSQPGCAYAVLL
CTWNKDTGSPPASEEATGDSRETPAARDVVLHQTSGRIHNKNVSTHLIGNIRQGHNPEGGNAGLFALCTL
DGTLKLMQEADKLLWSVQVDHQLFALEKLDVTGNGLEEVVACAWDGQTYIIDHNRTVVRFQVDENIRAFC
AGQYACKEGRNSPCLVYVTFNQKIYVYWEVQLERMESTNLLKLLEAEPEYHRLLQELRVDPEDLPAVCTL
LHQTLYHPDQPLQCTPSSFQDPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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