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Report for CCDS3544.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
3544.2 |
Public |
Homo sapiens |
4 |
ENAM |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:10117](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:3544.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 3544.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000396073.4 |
ENSP00000379383.4 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000396073.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000379383.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000396073](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000379383](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_031889.3 |
NP_114095.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_031889.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_114095.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_031889](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_114095](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_114095.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_114095.2 |
1142 |
Q9NRM1 |
1142 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 3544.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3429 nt): ATGTTGGTGCTTCGGTGCAGGCTTGGAACCTCTTTTCCTAAACTAGATAACTTGGTACCAAAAGGCAAAA TGAAGATTCTCCTGGTCTTTCTAGGGCTTCTTGGTAATTCTGTTGCTATGCCAATGCACATGCCCCGAAT GCCTGGATTTAGCAGTAAAAGTGAGGAGATGATGCGGTATAATCAATTCAACTTTATGAACGGCCCACAT ATGGCACACCTGGGGCCCTTCTTTGGAAACGGTCTCCCTCAGCAATTTCCACAGTACCAGATGCCCATGT GGCCTCAGCCACCACCCAACACATGGCATCCACGGAAATCCTCAGCACCCAAACGTCATAACAAGACTGA TCAGACCCAAGAAACCCAGAAACCCAACCAGACTCAGTCAAAAAAGCCACCACAAAAGCGGCCTTTGAAG CAGCCATCACATAATCAACCTCAGCCCGAAGAGGAAGCTCAACCCCCTCAGGCATTCCCACCATTTGGAA ATGGGCTATTCCCCTATCAACAACCACCATGGCAAATTCCACAGAGGTTACCACCACCAGGTTATGGACG CCCACCAATCAGCAATGAAGAAGGGGGGAATCCTTACTTTGGATATTTTGGATATCATGGCTTTGGGGGT CGCCCTCCTTATTATTCAGAAGAAATGTTTGAACAAGATTTTGAAAAACCCAAAGAAGAAGATCCTCCTA AAGCAGAAAGTCCAGGCACAGAACCCACAGCTAATTCAACAGTCACTGAGACGAATTCTACCCAACCAAA TCCTAAAGGGAGTCAGGGAGGAAATGACACCAGCCCCACAGGAAACAGTACCCCAGGACTAAACACTGGG AACAACCCTCCAGCTCAAAATGGGATTGGCCCACTCCCTGCAGTCAACGCTTCAGGCCAGGGAGGGCCAG GAAGTCAAATCCCATGGAGACCAAGTCAGCCAAATATTCGTGAAAATCATCCATATCCTAATATAAGAAA TTTTCCTTCAGGAAGACAGTGGTATTTCACTGGTACTGTCATGGGGCACAGACAGAATAGGCCTTTTTAC AGAAATCAACAAGTTCAAAGGGGTCCTCGGTGGAACTTCTTTGCTTGGGAACGTAAACAAGTAGCTCGTC CAGGAAATCCAGTTTATCACAAAGCTTACCCTCCTACTTCAAGAGGCAATTATCCCAATTATGCAGGAAA TCCAGCAAATCTCAGAAGAAAGCCTCAGGGGCCAAATAAACACCCTGTAGGAACTACTGTTGCCCCACTG GGTCCCAAACCTGGCCCTGTTGTTCGCAATGAAAAAATCCAAAATCCAAAGGAGAAGCCCCTGGGTCCAA AAGAACAAATAATAGTTCCTACAAAGAATCCAACCAGCCCCTGGAGAAACTCTCAACAGTATGAAGTTAA TAAATCAAATTATAAACTGCCTCACTCTGAGGGTTATATGCCAGTCCCAAATTTTAATTCTGTTGATCAA CATGAAAACTCCTATTACCCAAGAGGAGATTCCAGAAAAGTCCCAAATTCTGATGGACAAACCCAAAGCC AGAATTTGCCCAAAGGGATTGTTTTAGGGTCAAGAAGGATGCCATATGAATCAGAAACTAATCAGTCAGA ATTAAAGCACAGCTCATATCAGCCTGCTGTATACCCTGAGGAAATCCCTTCTCCTGCAAAAGAACATTTT CCTGCTGGAAGAAATACTTGGGACCACCAAGAAATCTCTCCACCTTTTAAGGAAGATCCAGGGAGGCAAG AAGAACATTTACCCCATCCTTCCCATGGTTCTAGAGGAAGTGTTTTCTACCCTGAATATAACCCATATGA TCCCAGGGAAAACTCACCATACCTTAGAGGCAATACATGGGATGAGAGAGATGATTCTCCCAATACTATG GGGCAAAAAGAAAGTCCACTCTACCCCATAAATACCCCAGACCAGAAGGAGATAGTCCCTTATAATGAAG AGGACCCAGTTGATCCAACTGGAGATGAAGTCTTTCCTGGACAAAATAGATGGGGTGAAGAGTTGAGCTT CAAAGGAGGCCCAACAGTTAGGCACTATGAAGGTGAACAATATACCTCAAATCAGCCAAAGGAATATCTT CCCTATTCTTTAGATAATCCATCAAAACCAAGGGAGGATTTTTATTACAGTGAATTTTACCCATGGAGCC CGGATGAGAATTTTCCATCATATAATACAGCTTCTACTATGCCACCACCTATAGAGAGCAGGGGCTACTA CGTTAATAATGCCGCTGGACCAGAAGAAAGCACTCTATTTCCTTCACGGAATTCCTGGGACCACAGGATA CAAGCCCAAGGGCAGAGAGAAAGAAGGCCGTATTTTAACAGAAATATCTGGGATCAGGCAACACATTTAC AAAAAGCCCCAGCTAGGCCACCAGACCAGAAAGGTAACCAGCCCTATTACAGTAACACCCCAGCTGGGCT TCAGAAAAATCCAATATGGCATGAAGGTGAGAATTTGAACTATGGCATGCAAATAACTAGGATGAATTCT CCAGAGAGAGAACATTCATCTTTCCCTAACTTCATCCCACCAAGTTACCCATCAGGTCAAAAAGAAGCAC ATTTATTTCACCTAAGCCAGAGAGGCTCTTGCTGTGCTGGTAGCTCCACAGGGCCCAAGGACAATCCACT AGCTCTACAAGACTACACTCCATCCTATGGTCTTGCACCTGGGGAGAACCAAGACACCAGTCCTCTGTAT ACAGACGGTAGTCATACCAAGCAGACAAGAGATATCATCTCCCCAACAAGCATCCTACCAGGCCAAAGAA ACAGCTCAGAGAAGAGGGAAAGCCAAAACCCTTTTAGAGATGATGTGTCCACGCTGAGGAGGAACACACC ATGTTCTATAAAGAATCAACTGGGCCAAAAGGAAATTATGCCCTTTCCTGAAGCCAGTTCCCTTCAATCA AAGAATACACCTTGTCTCAAAAATGATCTTGGAGGAGATGGGAACAACATTCTGGAACAAGTTTTTGAAG ACAACCAGCTCAATGAAAGAACTGTTGACCTTACTCCTGAGCAGCTTGTTATTGGTACACCTGATGAAGG CTCCAATCCAGAAGGCATCCAAAGTCAAGTCCAAGAAAATGAGAGTGAGAGGCAACAGCAAAGACCATCT AACATTCTGCATTTGCCATGCTTTGGCTCCAAATTAGCAAAGCATCACTCTTCCACCACCGGAACTCCAT CTAGCGATGGAAGGCAAAGCCCATTTGATGGGGATTCAATTACGCCTACTGAAAATCCTAACACATTGGT TGAGTTAGCTACTGAGGAACAATTTAAGAGTATAAATGTAGACCCACTTGATGCAGATGAACACAGTCCA TTTGAATTCCTTCAAAGAGGGACCAATGTACAGGACCAGGTACAAGACTGCTTACTACTTCAGGCCTAG
Translation (1142 aa): MLVLRCRLGTSFPKLDNLVPKGKMKILLVFLGLLGNSVAMPMHMPRMPGFSSKSEEMMRYNQFNFMNGPH MAHLGPFFGNGLPQQFPQYQMPMWPQPPPNTWHPRKSSAPKRHNKTDQTQETQKPNQTQSKKPPQKRPLK QPSHNQPQPEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEGGNPYFGYFGYHGFGG RPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTANSTVTETNSTQPNPKGSQGGNDTSPTGNSTPGLNTG NNPPAQNGIGPLPAVNASGQGGPGSQIPWRPSQPNIRENHPYPNIRNFPSGRQWYFTGTVMGHRQNRPFY RNQQVQRGPRWNFFAWERKQVARPGNPVYHKAYPPTSRGNYPNYAGNPANLRRKPQGPNKHPVGTTVAPL GPKPGPVVRNEKIQNPKEKPLGPKEQIIVPTKNPTSPWRNSQQYEVNKSNYKLPHSEGYMPVPNFNSVDQ HENSYYPRGDSRKVPNSDGQTQSQNLPKGIVLGSRRMPYESETNQSELKHSSYQPAVYPEEIPSPAKEHF PAGRNTWDHQEISPPFKEDPGRQEEHLPHPSHGSRGSVFYPEYNPYDPRENSPYLRGNTWDERDDSPNTM GQKESPLYPINTPDQKEIVPYNEEDPVDPTGDEVFPGQNRWGEELSFKGGPTVRHYEGEQYTSNQPKEYL PYSLDNPSKPREDFYYSEFYPWSPDENFPSYNTASTMPPPIESRGYYVNNAAGPEESTLFPSRNSWDHRI QAQGQRERRPYFNRNIWDQATHLQKAPARPPDQKGNQPYYSNTPAGLQKNPIWHEGENLNYGMQITRMNS PEREHSSFPNFIPPSYPSGQKEAHLFHLSQRGSCCAGSSTGPKDNPLALQDYTPSYGLAPGENQDTSPLY TDGSHTKQTRDIISPTSILPGQRNSSEKRESQNPFRDDVSTLRRNTPCSIKNQLGQKEIMPFPEASSLQS KNTPCLKNDLGGDGNNILEQVFEDNQLNERTVDLTPEQLVIGTPDEGSNPEGIQSQVQENESERQQQRPS NILHLPCFGSKLAKHHSSTTGTPSSDGRQSPFDGDSITPTENPNTLVELATEEQFKSINVDPLDADEHSP FEFLQRGTNVQDQVQDCLLLQA
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