NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4319.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4319.1 Public Homo sapiens 5 G3BP1 24 110 108 CCDS HistoryNCBI Gene:10146Re-query CCDS DB by CCDS ID:4319.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4319.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356245.8 ENSP00000348578.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356245.8Link to Ensembl Protein Viewer:ENSP00000348578.3Re-query CCDS DB by Nucleotide ID:ENST00000356245Re-query CCDS DB by Protein ID:ENSP00000348578
Original member Current member EBI ENST00000394123.7 ENSP00000377681.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394123.7Link to Ensembl Protein Viewer:ENSP00000377681.3Re-query CCDS DB by Nucleotide ID:ENST00000394123Re-query CCDS DB by Protein ID:ENSP00000377681
Original member Current member EBI ENST00000522761.6 ENSP00000430480.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522761.6Link to Ensembl Protein Viewer:ENSP00000430480.2Re-query CCDS DB by Nucleotide ID:ENST00000522761Re-query CCDS DB by Protein ID:ENSP00000430480
Original member Current member EBI ENST00000677323.1 ENSP00000502880.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677323.1Link to Ensembl Protein Viewer:ENSP00000502880.1Re-query CCDS DB by Nucleotide ID:ENST00000677323Re-query CCDS DB by Protein ID:ENSP00000502880
Original member Current member EBI ENST00000678070.1 ENSP00000503039.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678070.1Link to Ensembl Protein Viewer:ENSP00000503039.1Re-query CCDS DB by Nucleotide ID:ENST00000678070Re-query CCDS DB by Protein ID:ENSP00000503039
Original member Current member EBI ENST00000678925.1 ENSP00000503699.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678925.1Link to Ensembl Protein Viewer:ENSP00000503699.1Re-query CCDS DB by Nucleotide ID:ENST00000678925Re-query CCDS DB by Protein ID:ENSP00000503699
Original member Current member EBI ENST00000676978.1 ENSP00000503939.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676978.1Link to Ensembl Protein Viewer:ENSP00000503939.1Re-query CCDS DB by Nucleotide ID:ENST00000676978Re-query CCDS DB by Protein ID:ENSP00000503939
Original member Current member EBI ENST00000678101.1 ENSP00000504140.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678101.1Link to Ensembl Protein Viewer:ENSP00000504140.1Re-query CCDS DB by Nucleotide ID:ENST00000678101Re-query CCDS DB by Protein ID:ENSP00000504140
Original member Current member EBI ENST00000676827.1 ENSP00000504627.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676827.1Link to Ensembl Protein Viewer:ENSP00000504627.1Re-query CCDS DB by Nucleotide ID:ENST00000676827Re-query CCDS DB by Protein ID:ENSP00000504627
Original member Current member NCBI NM_005754.3 NP_005745.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005754.3Link to Protein Sequence:NP_005745.1Re-query CCDS DB by Nucleotide ID:NM_005754Re-query CCDS DB by Protein ID:NP_005745Link to BLAST:NP_005745.1
Original member Current member NCBI NM_198395.2 NP_938405.1 Accepted alive Link to Nucleotide Sequence:NM_198395.2Link to Protein Sequence:NP_938405.1Re-query CCDS DB by Nucleotide ID:NM_198395Re-query CCDS DB by Protein ID:NP_938405Link to BLAST:NP_938405.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005745.1 466 Q13283-1 466 100% 0 0
NP_938405.1 466 Q13283-1 466 100% 0 0

Chromosomal Locations for CCDS 4319.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 151786621 151786715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151790323 151790404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151790889 151791062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151794159 151794249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151795479 151795575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151797227 151797428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151799212 151799313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151799889 151800000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151800218 151800346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151800760 151800869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151803885 151804091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGGTGATGGAGAAGCCTAGTCCCCTGCTGGTCGGGCGGGAATTTGTGAGACAGTATTACACACTGCTGA
ACCAGGCCCCAGACATGCTGCATAGATTTTATGGAAAGAACTCTTCTTATGTCCATGGGGGATTGGATTC
AAATGGAAAGCCAGCAGATGCAGTCTACGGACAGAAAGAAATCCACAGGAAAGTGATGTCACAAAACTTC
ACCAACTGCCACACCAAGATTCGCCATGTTGATGCTCATGCCACGCTAAATGATGGTGTGGTAGTCCAGG
TGATGGGGCTTCTCTCTAACAACAACCAGGCTTTGAGGAGATTCATGCAAACGTTTGTCCTTGCTCCTGA
GGGGTCTGTTGCAAATAAATTCTATGTTCACAATGATATCTTCAGATACCAAGATGAGGTCTTTGGTGGG
TTTGTCACTGAGCCTCAGGAGGAGTCTGAAGAAGAAGTAGAGGAACCTGAAGAAAGACAGCAAACACCTG
AGGTGGTACCTGATGATTCTGGAACTTTCTATGATCAGGCAGTTGTCAGTAATGACATGGAAGAACATTT
AGAGGAGCCTGTTGCTGAACCAGAGCCTGATCCTGAACCAGAACCAGAACAAGAACCTGTATCTGAAATC
CAAGAGGAAAAGCCTGAGCCAGTATTAGAAGAAACTGCCCCTGAGGATGCTCAGAAGAGTTCTTCTCCAG
CACCTGCAGACATAGCTCAGACAGTACAGGAAGACTTGAGGACATTTTCTTGGGCATCTGTGACCAGTAA
GAATCTTCCACCCAGTGGAGCTGTTCCAGTTACTGGGATACCACCTCATGTTGTTAAAGTACCAGCTTCA
CAGCCCCGTCCAGAGTCTAAGCCTGAATCTCAGATTCCACCACAAAGACCTCAGCGGGATCAAAGAGTGC
GAGAACAACGAATAAATATTCCTCCCCAAAGGGGACCCAGACCAATCCGTGAGGCTGGTGAGCAAGGTGA
CATTGAACCCCGAAGAATGGTGAGACACCCTGACAGTCACCAACTCTTCATTGGCAACCTGCCTCATGAA
GTGGACAAATCAGAGCTTAAAGATTTCTTTCAAAGTTATGGAAACGTGGTGGAGTTGCGCATTAACAGTG
GTGGGAAATTACCCAATTTTGGTTTTGTTGTGTTTGATGATTCTGAGCCTGTTCAGAAAGTCCTTAGCAA
CAGGCCCATCATGTTCAGAGGTGAGGTCCGTCTGAATGTCGAAGAGAAGAAGACTCGAGCTGCCAGGGAA
GGCGACCGACGAGATAATCGCCTTCGGGGACCTGGAGGCCCTCGAGGTGGGCTGGGTGGTGGAATGAGAG
GCCCTCCCCGTGGAGGCATGGTGCAGAAACCAGGATTTGGAGTGGGAAGGGGGCTTGCGCCACGGCAGTG
A

Translation (466 aa):
MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNF
TNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGG
FVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEI
QEEKPEPVLEETAPEDAQKSSSPAPADIAQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPAS
QPRPESKPESQIPPQRPQRDQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHE
VDKSELKDFFQSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAARE
GDRRDNRLRGPGGPRGGLGGGMRGPPRGGMVQKPGFGVGRGLAPRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH