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Report for CCDS73262.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73262.1 Public Homo sapiens 11 SPON1 24 110 108 CCDS HistoryNCBI Gene:10418Re-query CCDS DB by CCDS ID:73262.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73262.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000576479.4 ENSP00000460236.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000576479.4Link to Ensembl Protein Viewer:ENSP00000460236.1Re-query CCDS DB by Nucleotide ID:ENST00000576479Re-query CCDS DB by Protein ID:ENSP00000460236
Original member Current member NCBI NM_006108.4 NP_006099.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006108.4Link to Protein Sequence:NP_006099.2Re-query CCDS DB by Nucleotide ID:NM_006108Re-query CCDS DB by Protein ID:NP_006099Link to BLAST:NP_006099.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006099.2 807 Q9HCB6 807 100% 0 0

Chromosomal Locations for CCDS 73262.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 13962905 13963142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 13982847 13982953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 14041521 14041654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 14075345 14075418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 14079899 14080021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 14135420 14135568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 14243332 14243396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 14254528 14254729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 14255647 14255787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 14256617 14256692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 14257716 14257898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 14259280 14259450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 14259534 14259701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 14260588 14260752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 14262712 14262975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 14265524 14265687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2424 nt):
ATGAGGCTGTCCCCGGCGCCCCTGAAGCTGAGCCGGACTCCGGCACTGCTGGCCCTGGCGCTGCCCCTGG
CCGCGGCGCTGGCCTTCTCCGACGAGACCCTGGACAAAGTGCCCAAGTCAGAGGGCTACTGCAGCCGTAT
CCTGCGCGCCCAGGGCACGCGGCGCGAGGGCTACACCGAGTTCAGCCTCCGCGTGGAGGGCGACCCCGAC
TTCTACAAGCCGGGAACCAGCTACCGCGTAACACTTTCAGCTGCTCCTCCCTCCTACTTCAGAGGATTCA
CATTAATTGCCCTCAGAGAGAACAGAGAGGGTGATAAGGAAGAAGACCATGCTGGGACCTTCCAGATCAT
AGACGAAGAAGAAACTCAGTTTATGAGCAATTGCCCTGTTGCAGTCACTGAAAGCACTCCACGGAGGAGG
ACCCGGATCCAGGTGTTTTGGATAGCACCACCAGCGGGAACAGGCTGCGTGATTCTGAAGGCCAGCATCG
TACAAAAACGCATTATTTATTTTCAAGATGAGGGCTCTCTGACCAAGAAACTTTGTGAACAAGATTCCAC
ATTTGATGGGGTGACTGACAAACCCATCTTAGACTGCTGTGCCTGCGGAACTGCCAAGTACAGACTCACA
TTTTATGGGAATTGGTCCGAGAAGACACACCCAAAGGATTACCCTCGTCGGGCCAACCACTGGTCTGCGA
TCATCGGAGGATCCCACTCCAAGAATTATGTACTGTGGGAATATGGAGGATATGCCAGCGAAGGCGTCAA
ACAAGTTGCAGAATTGGGCTCACCCGTGAAAATGGAGGAAGAAATTCGACAACAGAGTGATGAGGTCCTC
ACCGTCATCAAAGCCAAAGCCCAATGGCCAGCCTGGCAGCCTCTCAACGTGAGAGCAGCACCTTCAGCTG
AATTTTCCGTGGACAGAACGCGCCATTTAATGTCCTTCCTGACCATGATGGGCCCTAGTCCCGACTGGAA
CGTAGGCTTATCTGCAGAAGATCTGTGCACCAAGGAATGTGGCTGGGTCCAGAAGGTGGTGCAAGACCTG
ATTCCCTGGGACGCTGGCACCGACAGCGGGGTGACCTATGAGTCACCCAACAAACCCACCATTCCCCAGG
AGAAAATCCGGCCCCTGACCAGCCTGGACCATCCTCAGAGTCCTTTCTATGACCCAGAGGGTGGGTCCAT
CACTCAAGTAGCCAGAGTTGTCATCGAGAGAATCGCACGGAAGGGTGAACAATGCAATATTGTACCTGAC
AATGTCGATGATATTGTAGCTGACCTGGCTCCAGAAGAGAAAGATGAAGATGACACCCCTGAAACCTGCA
TCTACTCCAACTGGTCCCCATGGTCCGCCTGCAGCTCCTCCACCTGTGACAAAGGCAAGAGGATGCGACA
GCGCATGCTGAAAGCACAGCTGGACCTCAGCGTCCCCTGCCCTGACACCCAGGACTTCCAGCCCTGCATG
GGCCCTGGCTGCAGTGACGAAGACGGCTCCACCTGCACCATGTCCGAGTGGATCACCTGGTCGCCCTGCA
GCATCTCCTGCGGCATGGGCATGAGGTCCCGGGAGAGGTATGTGAAGCAGTTCCCGGAGGACGGCTCCGT
GTGCACGCTGCCCACTGAGGAAACGGAGAAGTGCACGGTCAACGAGGAGTGCTCTCCCAGCAGCTGCCTG
ATGACCGAGTGGGGCGAGTGGGACGAGTGCAGCGCCACCTGCGGCATGGGCATGAAGAAGCGGCACCGCA
TGATCAAGATGAACCCCGCAGATGGCTCCATGTGCAAAGCCGAGACATCACAGGCAGAGAAGTGCATGAT
GCCAGAGTGCCACACCATCCCATGCTTGCTGTCCCCATGGTCCGAGTGGAGTGACTGCAGCGTGACCTGC
GGGAAGGGCATGCGAACCCGACAGCGGATGCTCAAGTCTCTGGCAGAACTTGGAGACTGCAATGAGGATC
TGGAGCAGGTGGAGAAGTGCATGCTCCCTGAATGCCCCATTGACTGTGAGCTCACCGAGTGGTCCCAGTG
GTCGGAATGTAACAAGTCATGTGGGAAAGGCCACGTGATTCGAACCCGGATGATCCAAATGGAGCCTCAG
TTTGGAGGTGCACCCTGCCCAGAGACTGTGCAGCGAAAAAAGTGCCGCATCCGAAAATGCCTTCGAAATC
CATCCATCCAAAAGCTACGCTGGAGGGAGGCCCGAGAGAGCCGGCGGAGTGAGCAGCTGAAGGAAGAGTC
TGAAGGGGAGCAGTTCCCAGGTTGTAGGATGCGCCCATGGACGGCCTGGTCAGAATGCACCAAACTGTGC
GGAGGTGGAATTCAGGAACGTTACATGACTGTAAAGAAGAGATTCAAAAGCTCCCAGTTTACCAGCTGCA
AAGACAAGAAGGAGATCAGAGCATGCAATGTTCATCCTTGTTAG

Translation (807 aa):
MRLSPAPLKLSRTPALLALALPLAAALAFSDETLDKVPKSEGYCSRILRAQGTRREGYTEFSLRVEGDPD
FYKPGTSYRVTLSAAPPSYFRGFTLIALRENREGDKEEDHAGTFQIIDEEETQFMSNCPVAVTESTPRRR
TRIQVFWIAPPAGTGCVILKASIVQKRIIYFQDEGSLTKKLCEQDSTFDGVTDKPILDCCACGTAKYRLT
FYGNWSEKTHPKDYPRRANHWSAIIGGSHSKNYVLWEYGGYASEGVKQVAELGSPVKMEEEIRQQSDEVL
TVIKAKAQWPAWQPLNVRAAPSAEFSVDRTRHLMSFLTMMGPSPDWNVGLSAEDLCTKECGWVQKVVQDL
IPWDAGTDSGVTYESPNKPTIPQEKIRPLTSLDHPQSPFYDPEGGSITQVARVVIERIARKGEQCNIVPD
NVDDIVADLAPEEKDEDDTPETCIYSNWSPWSACSSSTCDKGKRMRQRMLKAQLDLSVPCPDTQDFQPCM
GPGCSDEDGSTCTMSEWITWSPCSISCGMGMRSRERYVKQFPEDGSVCTLPTEETEKCTVNEECSPSSCL
MTEWGEWDECSATCGMGMKKRHRMIKMNPADGSMCKAETSQAEKCMMPECHTIPCLLSPWSEWSDCSVTC
GKGMRTRQRMLKSLAELGDCNEDLEQVEKCMLPECPIDCELTEWSQWSECNKSCGKGHVIRTRMIQMEPQ
FGGAPCPETVQRKKCRIRKCLRNPSIQKLRWREARESRRSEQLKEESEGEQFPGCRMRPWTAWSECTKLC
GGGIQERYMTVKKRFKSSQFTSCKDKKEIRACNVHPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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