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Report for CCDS47063.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47063.1 Public Homo sapiens 4 CENPC 24 110 108 CCDS HistoryNCBI Gene:1060Re-query CCDS DB by CCDS ID:47063.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47063.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000273853.11 ENSP00000273853.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000273853.11Link to Ensembl Protein Viewer:ENSP00000273853.6Re-query CCDS DB by Nucleotide ID:ENST00000273853Re-query CCDS DB by Protein ID:ENSP00000273853
Original member Current member NCBI NM_001812.4 NP_001803.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001812.4Link to Protein Sequence:NP_001803.2Re-query CCDS DB by Nucleotide ID:NM_001812Re-query CCDS DB by Protein ID:NP_001803Link to BLAST:NP_001803.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001803.2 943 Q03188-1 943 100% 0 0

Chromosomal Locations for CCDS 47063.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 67472605 67472675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67474888 67474978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67489967 67490121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67492180 67492275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67492869 67492997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67493884 67493988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67495159 67495212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67505205 67505284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67506788 67506934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67508814 67509105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67512402 67512569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67514074 67514687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67518156 67518368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67519217 67519502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67530815 67530914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67539840 67539934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67540980 67541050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67544149 67544195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67545338 67545355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2832 nt):
ATGGCTGCGTCCGGTCTGGATCATCTCAAAAATGGCTACAGAAGAAGATTTTGTCGACCTTCCAGGGCAC
GTGACATTAACACAGAGCAAGGCCAGAATGTTCTGGAAATCTTACAAGACTGTTTTGAAGAAAAAAGTCT
TGCCAATGATTTTAGTACAAATTCTACAAAATCAGTGCCTAATTCAACACGCAAAATAAAAGACACTTGT
ATTCAGTCACCAAGCAAAGAGTGCCAGAAATCACATCCAAAGTCAGTTCCAGTTTCTTCAAAGAAGAAAG
AAGCCTCTCTACAGTTTGTTGTAGAACCAAGTGAAGCCACAAACAGATCAGTTCAGGCCCATGAAGTTCA
TCAGAAAATTCTGGCAACTGATGTTAGTTCCAAAAATACACCTGACTCGAAAAAAATATCAAGTAGAAAC
ATAAATGATCATCACAGTGAAGCTGATGAAGAATTTTACTTATCCGTTGGCTCACCTTCTGTTCTTTTGG
ATGCAAAAACATCTGTATCACAAAATGTTATTCCATCTAGTGCCCAAAAGAGAGAGACTTACACTTTTGA
AAATTCAGTAAATATGCTGCCTTCAAGTACAGAGGTTTCAGTTAAAACCAAAAAAAGGTTAAACTTTGAT
GATAAAGTTATGTTAAAGAAAATAGAAATAGATAATAAAGTATCAGATGAAGAGGATAAAACATCGGAAG
GACAAGAAAGAAAACCATCAGGATCATCTCAGAATAGAATACGAGATTCAGAATATGAAATTCAACGACA
AGCTAAAAAAAGTTTTTCAACATTGTTTTTAGAAACAGTAAAACGAAAAAGTGAATCCAGTCCCATTGTT
AGGCATGCGGCAACTGCTCCACCTCATTCGTGTCCTCCCGATGATACGAAGTTGATAGAGGATGAATTTA
TAATTGATGAGTCGGATCAAAGTTTTGCCAGTAGATCTTGGATTACAATACCAAGAAAGGCAGGGTCTCT
GAAACAACGCACAATATCCCCGGCTGAGAGCACTGCACTCCTTCAAGGTAGAAAGTCAAGAGAAAAGCAT
CATAATATATTACCTAAGACTTTGGCAAATGACAAACATTCCCATAAACCTCACCCAGTAGAGACATCTC
AGCCCTCTGATAAAACAGTACTGGATACAAGTTATGCTTTGATAGGTGAAACAGTAAATAATTATAGATC
TACAAAATATGAAATGTATTCCAAGAATGCAGAAAAACCATCTAGAAGCAAAAGGACTATAAAACAAAAA
CAGAGAAGAAAATTCATGGCTAAACCAGCTGAAGAACAGCTTGATGTGGGACAGTCTAAAGATGAAAACA
TACATACATCACATATTACCCAAGACGAATTTCAAAGAAATTCAGACAGAAATATGGAAGAGCATGAAGA
GATGGGAAATGATTGTGTTTCCAAAAAACAGATGCCACCTGTGGGAAGCAAGAAAAGTAGCACTAGAAAA
GATAAGGAAGAATCTAAAAAGAAGCGCTTTTCCAGTGAGTCCAAGAACAAACTTGTACCTGAAGAAGTGA
CTTCAACTGTCACGAAAAGTCGAAGAATTTCCAGGCGTCCATCTGATTGGTGGGTGGTAAAATCAGAGGA
GAGTCCTGTTTATAGCAATTCTTCAGTAAGAAATGAATTACCAATGCATCACAATAGTAGCCGAAAATCT
ACTAAGAAAACAAATCAGTCATCTAAGAATATTAGGAAAAAAACTATTCCACTTAAAAGGCAGAAGACAG
CAACTAAAGGCAACCAAAGAGTACAGAAGTTTTTAAATGCTGAAGGTTCTGGAGGTATCGTTGGTCATGA
TGAAATTTCCAGATGTTCGCTGAGTGAGCCATTGGAAAGTGATGAGGCAGACTTGGCTAAGAAGAAAAAT
CTTGATTGTTCTAGATCTACAAGAAGCTCAAAGAATGAAGATAACATTATGACTGCACAGAATGTTCCCC
TAAAGCCTCAGACCAGTGGATATACATGTAATATACCAACAGAGTCAAACTTGGATTCTGGAGAGCATAA
GACTTCAGTTTTAGAGGAAAGTGGACCTTCCAGGCTCAATAATAATTATTTAATGTCTGGAAAGAATGAT
GTGGATGATGAGGAAGTTCATGGAAGTTCAGATGACTCAAAACAATCTAAAGTGATACCAAAGAACAGAA
TCCATCACAAACTAGTATTGCCCTCCAACACACCAAATGTTCGCAGGACCAAGAGAACACGTTTGAAACC
TTTGGAGTACTGGCGAGGAGAGCGAATAGATTATCAAGGAAGGCCATCAGGAGGATTCGTGATTAGTGGA
GTACTATCTCCAGACACAATATCGTCTAAAAGGAAGGCAAAAGAAAATATTGGAAAAGTCAACAAAAAAT
CTAATAAGAAAAGGATCTGTCTTGATAACGATGAAAGAAAGACTAACTTAATGGTAAATCTAGGTATACC
TCTTGGAGATCCTTTGCAGCCAACGAGGGTAAAGGACCCAGAAACAAGAGAGATTATTCTCATGGATCTT
GTAAGGCCACAAGATACATATCAATTTTTTGTTAAGCATGGTGAGTTGAAGGTATACAAGACATTGGATA
CACCCTTTTTTTCTACTGGGAAATTGATATTAGGACCACAAGAAGAAAAGGGAAAGCAGCATGTTGGCCA
GGATATATTGGTTTTTTATGTTAACTTTGGTGACCTTTTGTGTACTTTACATGAAACACCTTATATATTA
AGTACTGGGGATTCGTTCTATGTTCCTTCAGGTAACTATTATAACATCAAAAATCTCCGGAATGAGGAAA
GTGTTCTTCTTTTTACTCAGATAAAAAGATGA

Translation (943 aa):
MAASGLDHLKNGYRRRFCRPSRARDINTEQGQNVLEILQDCFEEKSLANDFSTNSTKSVPNSTRKIKDTC
IQSPSKECQKSHPKSVPVSSKKKEASLQFVVEPSEATNRSVQAHEVHQKILATDVSSKNTPDSKKISSRN
INDHHSEADEEFYLSVGSPSVLLDAKTSVSQNVIPSSAQKRETYTFENSVNMLPSSTEVSVKTKKRLNFD
DKVMLKKIEIDNKVSDEEDKTSEGQERKPSGSSQNRIRDSEYEIQRQAKKSFSTLFLETVKRKSESSPIV
RHAATAPPHSCPPDDTKLIEDEFIIDESDQSFASRSWITIPRKAGSLKQRTISPAESTALLQGRKSREKH
HNILPKTLANDKHSHKPHPVETSQPSDKTVLDTSYALIGETVNNYRSTKYEMYSKNAEKPSRSKRTIKQK
QRRKFMAKPAEEQLDVGQSKDENIHTSHITQDEFQRNSDRNMEEHEEMGNDCVSKKQMPPVGSKKSSTRK
DKEESKKKRFSSESKNKLVPEEVTSTVTKSRRISRRPSDWWVVKSEESPVYSNSSVRNELPMHHNSSRKS
TKKTNQSSKNIRKKTIPLKRQKTATKGNQRVQKFLNAEGSGGIVGHDEISRCSLSEPLESDEADLAKKKN
LDCSRSTRSSKNEDNIMTAQNVPLKPQTSGYTCNIPTESNLDSGEHKTSVLEESGPSRLNNNYLMSGKND
VDDEEVHGSSDDSKQSKVIPKNRIHHKLVLPSNTPNVRRTKRTRLKPLEYWRGERIDYQGRPSGGFVISG
VLSPDTISSKRKAKENIGKVNKKSNKKRICLDNDERKTNLMVNLGIPLGDPLQPTRVKDPETREIILMDL
VRPQDTYQFFVKHGELKVYKTLDTPFFSTGKLILGPQEEKGKQHVGQDILVFYVNFGDLLCTLHETPYIL
STGDSFYVPSGNYYNIKNLRNEESVLLFTQIKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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