NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS79501.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79501.1 Public Mus musculus 17 Ldhal6b 23 108 98 CCDS HistoryNCBI Gene:106557Re-query CCDS DB by CCDS ID:79501.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 79501.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000189788.1 ENSMUSP00000139572.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189788.1Link to Ensembl Protein Viewer:ENSMUSP00000139572.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189788Re-query CCDS DB by Protein ID:ENSMUSP00000139572
Original member Current member NCBI NM_175349.2 NP_780558.1 Accepted alive Link to Nucleotide Sequence:NM_175349.2Link to Protein Sequence:NP_780558.1Re-query CCDS DB by Nucleotide ID:NM_175349Re-query CCDS DB by Protein ID:NP_780558Link to BLAST:NP_780558.1

Chromosomal Locations for CCDS 79501.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 5417509 5418657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGGCCTGGGCTACAAGCATCTTGAGAGCCAGCAGAAGAGTGAGTACAACCAGGGTAGATTTCAAGGGCT
TTGGCATAGCTCTATGGCCCAGTCAGGTGCAACGTGTCCCTCCCAACCGGGCCTGGTGGAGCCTCACGCC
CACGTCCTCCATGGCGACCGTGAAGGGTGAACTTATCCAGCACATCAGCTCCGAAGAGCCCGTTCTCCAC
AACAAGGTCTCCATTGTAGGAACTGGATCAGTCGGCATGGCCTGTGCCATCGGCATCATAGCGAAAGGCT
TGACTGACGAGCTCGCCCTTGTTGATAATAATGAAGAAAAAATGAAGGGTGAGACGATGGATCTTCAGCA
CGGCAGTGTCTTCATGAAAATGCCAAATATTGTTTGCAGCAAGGATTTCCGTGTCACTGCCAACTCTGAG
GTAGTGATTATCACAGCGGGTGCACGCCAAGAGAAAAATGAGACACGCCTGAATTTAGTCCAGCGAAACG
TAACCATCTTTAAGGCAATGGTTGCGGAAATTATCAAGCACAGCCCTCGCTGCAAAATTATTGTTGTCTC
CAATCCAGTGGATATCTTAACTTTCGTAACCTGGAAGTTGAGTGGGTTTCCCAAAAACCGTATTATTGGA
AGCGGCTGTAACCTAGATACAGCTCGCTTCCGTTACATGCTCGGGCAGAGGCTTGGGATCCACTCTGAAA
GCTGCCACGGGTGGGTCCTTGGAGAGCATGGAGATTCAAGTGTCCCTGTGTGGAGTGGTGTGAACATCGC
CGGCGTGCCGCTGAGAGAGCTGAATTCAGCTATAGGAACAAGCAAAGACCCCGAGAAATGGGGCGATGTC
CACAAAGAAGTCATTGCCAGTGCCTATAATATTATCAAAATGAAAGGTTATACTTCCTGGGCCATTGGCC
TGTCTGTAACTGATATTGCAGAGAGTATCCTGAAGAATCTCAGGAAGACGCATCCAGTTACCACCAAAAT
CCAAGGTCTCTACGGAATCAAAGAGGAGGTGTTCCTCAGCGTGCCTTGTATCCTGGGAGAGAGTGGCATA
TCTGATATCATAAAGGTAAAGCTGAGCCCTACAGAGGAGGCCCAGATGGTAAAGAGCGCAGAGACTATTT
GGAAAATCCAGAAAGATATTAAGTTTTAA

Translation (382 aa):
MAWATSILRASRRVSTTRVDFKGFGIALWPSQVQRVPPNRAWWSLTPTSSMATVKGELIQHISSEEPVLH
NKVSIVGTGSVGMACAIGIIAKGLTDELALVDNNEEKMKGETMDLQHGSVFMKMPNIVCSKDFRVTANSE
VVIITAGARQEKNETRLNLVQRNVTIFKAMVAEIIKHSPRCKIIVVSNPVDILTFVTWKLSGFPKNRIIG
SGCNLDTARFRYMLGQRLGIHSESCHGWVLGEHGDSSVPVWSGVNIAGVPLRELNSAIGTSKDPEKWGDV
HKEVIASAYNIIKMKGYTSWAIGLSVTDIAESILKNLRKTHPVTTKIQGLYGIKEEVFLSVPCILGESGI
SDIIKVKLSPTEEAQMVKSAETIWKIQKDIKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH