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Report for CCDS8520.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8520.1 Public Homo sapiens 12 TSPAN9 24 110 108 CCDS HistoryNCBI Gene:10867Re-query CCDS DB by CCDS ID:8520.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8520.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000011898.10 ENSP00000011898.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000011898.10Link to Ensembl Protein Viewer:ENSP00000011898.5Re-query CCDS DB by Nucleotide ID:ENST00000011898Re-query CCDS DB by Protein ID:ENSP00000011898
Original member Current member EBI ENST00000537971.5 ENSP00000444799.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537971.5Link to Ensembl Protein Viewer:ENSP00000444799.1Re-query CCDS DB by Nucleotide ID:ENST00000537971Re-query CCDS DB by Protein ID:ENSP00000444799
Original member Current member NCBI NM_001168320.2 NP_001161792.1 Accepted alive Link to Nucleotide Sequence:NM_001168320.2Link to Protein Sequence:NP_001161792.1Re-query CCDS DB by Nucleotide ID:NM_001168320Re-query CCDS DB by Protein ID:NP_001161792Link to BLAST:NP_001161792.1
Original member Current member NCBI NM_006675.5 NP_006666.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006675.5Link to Protein Sequence:NP_006666.1Re-query CCDS DB by Nucleotide ID:NM_006675Re-query CCDS DB by Protein ID:NP_006666Link to BLAST:NP_006666.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161792.1 239 O75954 239 100% 0 0
NP_006666.1 239 O75954 239 100% 0 0

Chromosomal Locations for CCDS 8520.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 3201194 3201256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3278421 3278612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3278992 3279066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3280382 3280483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3281198 3281329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3281734 3281817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3283045 3283116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGGCCAGGGGCTGCCTCTGCTGCTTGAAGTACATGATGTTCCTCTTCAATTTGATATTCTGGCTCTGTG
GCTGTGGGCTGCTGGGAGTGGGCATCTGGCTCTCCGTGTCCCAAGGCAACTTTGCCACCTTCTCCCCCAG
CTTCCCTTCGTTGTCTGCAGCCAACCTGGTCATTGCCATAGGCACCATTGTCATGGTGACGGGCTTCCTC
GGCTGCCTGGGGGCCATCAAGGAAAACAAGTGCCTCCTCCTCAGCTTTTTCATCGTCCTGTTGGTCATCC
TCCTAGCAGAGCTGATCTTACTCATCCTCTTCTTTGTCTACATGGACAAGGTGAACGAGAACGCCAAGAA
GGACCTGAAGGAAGGCCTGCTGCTGTACCACACCGAGAACAACGTGGGGCTGAAGAACGCCTGGAACATC
ATCCAGGCTGAGATGCGATGCTGTGGTGTCACTGACTACACAGACTGGTACCCAGTGCTGGGGGAGAACA
CGGTTCCCGACCGCTGCTGCATGGAGAACTCCCAGGGCTGCGGGCGCAACGCCACCACGCCTTTGTGGAG
AACGGGCTGCTATGAAAAGGTGAAGATGTGGTTCGATGACAATAAGCACGTGCTGGGCACGGTGGGGATG
TGCATCCTCATCATGCAGATCCTGGGCATGGCCTTCTCCATGACCCTCTTCCAGCACATCCACCGGACTG
GTAAGAAGTACGACGCATGA

Translation (239 aa):
MARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAIGTIVMVTGFL
GCLGAIKENKCLLLSFFIVLLVILLAELILLILFFVYMDKVNENAKKDLKEGLLLYHTENNVGLKNAWNI
IQAEMRCCGVTDYTDWYPVLGENTVPDRCCMENSQGCGRNATTPLWRTGCYEKVKMWFDDNKHVLGTVGM
CILIMQILGMAFSMTLFQHIHRTGKKYDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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