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Report for CCDS21652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21652.1 Public Mus musculus 7 Cavin3 23 108 98 CCDS HistoryNCBI Gene:109042Re-query CCDS DB by CCDS ID:21652.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21652.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047040.3 ENSMUSP00000044979.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047040.3Link to Ensembl Protein Viewer:ENSMUSP00000044979.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000047040Re-query CCDS DB by Protein ID:ENSMUSP00000044979
Original member Current member NCBI NM_028444.1 NP_082720.1 Accepted alive Link to Nucleotide Sequence:NM_028444.1Link to Protein Sequence:NP_082720.1Re-query CCDS DB by Nucleotide ID:NM_028444Re-query CCDS DB by Protein ID:NP_082720Link to BLAST:NP_082720.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082720.1 260 Q91VJ2 260 100% 0 0

Chromosomal Locations for CCDS 21652.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105480821 105481219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105481776 105482159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGGGGGAGAGCGCACTGGAGCCCGGACCTGTGCCTGAGACGCCCGCAGGGGGTCCGGTGCACGCAGTCA
CCGTGGTGACCTTGCTGGAGAAATTGGCCACCATGCTGGAGGCTCTGCGGGAGCGGCAAGGCGGCCTGGC
TGAGAGGCAGGGCGGCCTGGCGGGCTCCGTGCGTCGCATACAGAGTGGCCTGGGTGCGCTGAGTCGCAGC
CACGACACCACCAGCAACACACTGACGCAGCTGCTGGCCAAGGCGGAGCGCGTGGGCTCGCACGCCGACG
CAGCCCAGGAGCGGGCCGTGCGTCGCGCTGCTCAGGTGCAGCGGTTGGAGGCCAACCACGGGCTGCTGGT
GGCGCGCGGGAAGCTGCACGTCCTGCTCTTCAAGGAGGAGACTGAAATTCCAGCCCGCGCCTTCCAGAAA
GTCCCAGAGCTCTTGGGTCCGGAGGACCAGTTGGTGCTGGGCCCAGATCAGCCAGAGGATGAAGTTGGAG
AGAGTTCTGAAGAGGAGCCAGTGGAGTCCAGGGCTCAGCGGCTGCGCCGCACTGGTTTACAGAAAGTTCA
AAGCCTGAAAAGGGCTCTTTCCAGTCGTAAAGCAGCACAGCCCACACCAGTCAAGCCGCCACGCGTAGGG
CCTGTCCGGAGCTCTGAAGGCCCATCAGAAGGCCAGCCTGCAGCTCAGCCTGAAATGGAGTCCGAGCTCG
AGACTGCCCTGGAGCCAGAACCTCCTCAACCTACCAAGGAAGATCCTGAGAAACCCGTGCTTCAAATAGA
GAGCGCAGCCTGA

Translation (260 aa):
MGESALEPGPVPETPAGGPVHAVTVVTLLEKLATMLEALRERQGGLAERQGGLAGSVRRIQSGLGALSRS
HDTTSNTLTQLLAKAERVGSHADAAQERAVRRAAQVQRLEANHGLLVARGKLHVLLFKEETEIPARAFQK
VPELLGPEDQLVLGPDQPEDEVGESSEEEPVESRAQRLRRTGLQKVQSLKRALSSRKAAQPTPVKPPRVG
PVRSSEGPSEGQPAAQPEMESELETALEPEPPQPTKEDPEKPVLQIESAA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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