NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48217.1 Public Mus musculus 1 Prex2 23 108 98 CCDS HistoryNCBI Gene:109294Re-query CCDS DB by CCDS ID:48217.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48217.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027056.11 ENSMUSP00000027056.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027056.11Link to Ensembl Protein Viewer:ENSMUSP00000027056.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027056Re-query CCDS DB by Protein ID:ENSMUSP00000027056
Original member Current member NCBI NM_029525.1 NP_083801.1 Accepted alive Link to Nucleotide Sequence:NM_029525.1Link to Protein Sequence:NP_083801.1Re-query CCDS DB by Nucleotide ID:NM_029525Re-query CCDS DB by Protein ID:NP_083801Link to BLAST:NP_083801.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083801.1 1598 Q3LAC4-1 1598 100% 0 0

Chromosomal Locations for CCDS 48217.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 10993793 10993909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11061326 11061397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11065794 11065916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11068011 11068115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11080023 11080124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11089717 11089878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11098463 11098596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11101064 11101167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11107603 11107752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11110282 11110426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11112743 11112843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11123121 11123224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11123814 11123863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11132338 11132413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11136765 11136837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11139956 11140098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11140236 11140328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11142649 11142797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11149810 11149895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11153543 11153679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11156241 11156358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11160096 11160280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11162240 11162401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11169853 11170075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11170584 11170791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11181855 11182034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11184446 11184540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11185130 11185212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11185887 11185977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11186637 11186765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11193513 11193554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11199835 11200052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11204066 11204168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11208512 11208655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11231682 11231796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11265679 11265745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11265969 11266159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11285057 11285159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11289253 11289320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11297708 11297753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4797 nt):
ATGAGCGACGAAAGCGCCAGGGAAGTAGACAAGCAGCTTCGCCTGCGCGTGTGCGTGCTCAGCGAGCTGC
AGAAGACCGAGCGCGACTACGTGGGCACGCTGGAGTTCCTGGTGTCGGCCTTCTTGCATCGAATGAACCA
ATGTGCAGCAGCAAAGGTTGATAAAAATGTGACGGAGGAAACAGTGAAGATGTTATTCTCCAATATCGAG
GAGATCCTCATCGTTCATAAGGAGTTCTTGAAAGTTGTAGAAGAATGCTTATATCCGGAACCCAGTGCTC
AGCAGGAAGTGGGAGCCTGCTTCCTTCACTTTAAGGACAAGTTTCGTATCTATGATGAATATTGCAGCAA
CCATGAAAAGGCACAAAAATTGCTTCTTGAACTGAACAAAATAAGAACAATCCGGACATTTCTTCTGAAC
TGCATGCTGCTTGGAGGTCGGAAGAATACAGACGTTCCCCTGGAAGGATATTTAGTGACACCAATTCAGA
GGATATGCAAGTACCCTCTTCTTTTGAAGGAATTACTGAAGCGGACTCCACGGAGACATAGTGACTACAC
AGCAGTGATGGAAGCACTCCAAGCCATGAAAGCCGTGTGTTCCAACATTAATGAGGCCAAGAGACAGATG
GAGAAACTGGAAGTTTTAGAAGAGTGGCAGGCACACATTGAAGGCTGGGAGGGGTCCAACATTACTGACA
CCTGTACTGAGATGCTGATGTGTGGAGTCCTAATGAAAATTTCTTCCGGAAATATTCAAGAACGAGTGTT
TTTTCTTTTTGATAATCTTTTAGTATACTGCAAAAGAAAACACAGACGGCTGAAGAATAGTAAGGCATCC
ACAGATGGGTATCGGTATGTCTTTCGAGGGCGGATCAATACTGAGGTGATGGAAGTGGAAAATGTGGATG
ACGGCACAGCTGATTTTCACAGCAGTGGGCATATTGTTGTGAATGGGTGGAAGATACACAACACAGCAAA
AAATAAATGGTTTGTATGCATGGCTAAAAGCCCTGAAGAAAAGCATGAGTGGTTTGAAGCTATTTTGAAA
GAAAGAGAACGTCGGAAAGGGTTAAAACTAGGAATGGAACAAGACACCTGGGTAATGATCTCTGAGCAGG
GTGAGAAATTGTATAAAATGATGTGCAAACAGGGAAATCTGATCAAAGACAGAAAAAGAAAACTGACCAC
ATTTCCTAAGTGCTTCCTGGGAAGTGAATTTGTCTCATGGCTATTGGAAATTGGAGAGATTCACAGGCCC
GAAGAAGGTGTTCACTTAGGACAAGCGCTGTTAGAGAATGGGATCATCCACCATGTTACCGATAAGCACC
AGTTCAAACCGGAGCAAATGCTATACCGATTCCGTTATGACGATGGTACATTTTACCCCAGGAGTGAGAT
GCAGGACGTGATTTCTAAGGGTGTAAGGCTCTACTGTCGTCTTCATAGTCTGTTTACCCCAGTGGTCAGA
GATAAAGATTACCATTTAAGAACTTACAAATCTGTTGTCATGGCCAACAAATTGATAGACTGGTTAATTG
CACAGGGTGATTGCCGTACCAGGGAAGAGGCAATGATATTTGCTGTTGGGCTCTGTGACAATGGATTTAT
GCATCACGTCCTAGAAAAAAGTGAATTCAAAGATGAGCCTCTACTTTTCCGCTTTTTTGCTGATGAGGAA
ATGGAAGGATCAAATATGAAGCATAGGCTTATGAAACATGACTTGAAGGTTGTGGAGAATGTCATAGCTA
AGTCACTGTTGATTAAATCCAACGAAGGCAGCTATGGCTTTGGCCTAGAAGACAAAAACAAAGTTCCAAT
AATAAAATTAGTGGAAAAGGGGTCGAATGCCGAGATGGCTGGCATGGAAGTTGGGAAGAAGATATTTGCC
ATTAATGGTGACCTTGTTTTTCTGAGACCTTTTCCTGAAGTCGATTGCTTCCTGAAATCGTGCTTAAACA
GCAGAAAGCCACTGAGAGTCCTCGTGAGCACAAAGCCAAGAGAGACCGTTAAGATTCCAGATTCTGCAGA
CGGGCTTGGTTTCCAGATCAGAGGCTTTGGACCTTCAGTTGTGCATGCGGTGGGAAGAGGTACTGTGGCT
GCAGCAGCTGGCCTTCATCCAGGACAGTGTATTATCAAAGTGAATGGAATCAATGTCAGCAAAGAGACAC
ATGCCAGTGTCATCGCACATGTCACAGCCTGCCGGAAATACAAACGGCCAATGAAGCAAGATTCCATACA
GTGGGTCTACGACAGTCTTGAAAGTGCTCAGGAAGACATTCAGAAGTCCCACTCAAAGCCCCCTGGAGAC
GGGGCTGGAGATGCTTTTGAGTGCAAAGTAGAAGATGTCATTGACAAGTTCAACACCATGGCTATTATTG
ATGGCAAGAAGGAGCATGTGAGTCTGACGGTGGACAACGTCCACCTCGAGTATGGGGTTGTATATGAGTA
TGATAGCACGGCGGGCACAAAGTGCAATGTGGTGGAGAAGATGGTGGAGCCCAAAGGGTTCTTCAGCCTA
ACTGCCAAGATTCTGGAAGCCCTAGCAAAAAGTGACGAACATTTTGTCCAAAACTGCACCAGCCTTAATT
CTCTGAATGAAGTGATCGCCACTGATCTTCAGAGTAAATTCACCAGCATGTGCAGTGAGAGAATCGAACA
TGTGTGTCACAGAATATCCAGCTATGGGAGGTTCTCTCGGGTGCTGAAGAACAGAGCCTGGCCCACCTTT
AAGCAGGCCAAACCTAAGATCTCCCCACTGCACAGCAGTGATTTCTGCCCAACCAACTGCCACGTCAATG
TGATGGAAGTTTCTTATCCGAAAACATCAACTTCCCTGGGGAGTGCCTTCGGTGTGCAGCTAGATAGCAG
AAAACATAATTCTCACGATAAAGAAAATAAATCTGTCGAGCCAGGGAAACTGAGCCCCATGGTGTATATT
CAGCACACAATCACAACCATGGCAGCGCCTTCGGGCCTGTCACTGGGACACAAGGATGGGCATGGCCTCC
AGTATTTGCTGAAAGAAGAAGACTTAGAAACTCAAGATATCTATCACAAACTTCTGGGCAAGCTGCAGAC
TGCACTGAAGGAGGTAGAGATGAGCGTTTGTCAAATTGATGACCTTCTGTCTTCAATAACATATTCTCCT
AAATTGGAACGTAAGACAACAGAGTGTGTGACACCAATGGACAGTGACAACGAGAAGGGAGAGAGAAATA
GCAAACGTGTCTGTTTTAATGTAGCAGGGGATGAGCAAGAGGATTCAGGCCATGATACAGTCAGCAACAG
AGACTCTTACAGTGACTGCAACAGCAACAGGAATTCCATTGCTTCCTTCACGAGTATCTGCAGCAGCCAG
TGCAGTTCCTACTTCCACAGTGATGAGATGGACTCAGGTGATGAGCTTCCTATCAGTGTCCGGATATCTC
ATGATAAACAAGACAAGATCCACACTTGCCTGGAACAGCTCTTCAGCCAGATTGATTCAATAATCAACCT
CTTGAAAGGACAAGCTGTTATAAGAGCCTTTGAGCAGACCAAGTATCTCACACCGGGTCGAGGATTGCAA
GAATTCCAACAGGAAATGGAGGCAAAGCTGAGTTGCCCCAGGAGGTTGCGGCTCCATCTCAAGCAGGACC
CCTGGAATCTTCCCAGCAGCATCCAGGCGCTTGCACAGAGCATCAGAAAACATGCTGAAGAAGTGAAGTG
CCGCATACTACTGGCTCTCCTTGAATACTCAGACAGTGAAACCCAACTCCGGAGAGACATGGTTTTCTGT
CAAAGTCTTGTGGCCACTGTCTGTGCCTTCTCTGAGCAGCTCATGGCTGCCTTAAACCAGATGTTTGACA
ACAGCAAGGAAAATGAAATGGAGACTTGTGAAGCCAGCAGGAGGTGGCTGGACCAGATTGCAAATGCTGG
TGTGCTTTTTCACTTCCAGTCACTTCTGTCACCAAATTTGAAAGATGAACAAGCCATGCTTGAGGATACA
CTGGTTGCCCTGTTTGATTTGGAAAAAGTTTCCTTCTTCTTCAAACCATCAGAAGAGGATCCACTGGTTG
CAAATGTCCCTCTTACCTACCAAGTGGAAGGAAGCAGGCAGGCTCTGAAAGTTTACTTCTACATGGATAG
TTACCATTTTGAGCAGCTGCCCCAACGGTTGAAGAATGGAGGAGGGTTTAAAATTCATCCTGTTCTCTTT
TCACAAGCATTGGAGAGTATGGAAGGATATTGCTATAGAGACAACATCTCTGTGGAAGAGTTTCAAGCAC
AAATAAACACAGCCTCCCTGGAAAAGGTCAAACAGTACAATCAGAAGCTCAGGGCATTCTACTTGGACAA
GTCAAATTCCCCACCGAATACCACATCTAAAGCTGCCTACATAGATAAGCTCATGAAGCCTCTCAATGCT
TTAGATGAACTTTACCGGCTGATCACCTCATTTATCAGATCCAAACGCATCGCTGCCTGTGTGAACACAC
CTTGCAGCGCCTCTGGAGTCGGACTGCTGTCAGTTTCTTCAGAGCTGTGTGACAGGCTCGGTGCCTGTCA
CATCATCATGTGCAGCAGTGGTGTGCACCGGTGCACCCTGAGTGTGACACTAGAGCAAACCATCACTTTA
GCAAGAAGCCATGGGCTCCCTCCTCGGTACATTATGCAGGCCATGGATGTGATGAGAAAGCAGGGTGCAA
GAGTTCAGAACACAGCTAAAAACTTGGGCGTTAGAGACCGGACTCCTCAGTCAGCTCCAAGGCTGTACAA
GCTCTGCGAGCCACCACCTCCAGTAGGAGAAGAATGA

Translation (1598 aa):
MSDESAREVDKQLRLRVCVLSELQKTERDYVGTLEFLVSAFLHRMNQCAAAKVDKNVTEETVKMLFSNIE
EILIVHKEFLKVVEECLYPEPSAQQEVGACFLHFKDKFRIYDEYCSNHEKAQKLLLELNKIRTIRTFLLN
CMLLGGRKNTDVPLEGYLVTPIQRICKYPLLLKELLKRTPRRHSDYTAVMEALQAMKAVCSNINEAKRQM
EKLEVLEEWQAHIEGWEGSNITDTCTEMLMCGVLMKISSGNIQERVFFLFDNLLVYCKRKHRRLKNSKAS
TDGYRYVFRGRINTEVMEVENVDDGTADFHSSGHIVVNGWKIHNTAKNKWFVCMAKSPEEKHEWFEAILK
ERERRKGLKLGMEQDTWVMISEQGEKLYKMMCKQGNLIKDRKRKLTTFPKCFLGSEFVSWLLEIGEIHRP
EEGVHLGQALLENGIIHHVTDKHQFKPEQMLYRFRYDDGTFYPRSEMQDVISKGVRLYCRLHSLFTPVVR
DKDYHLRTYKSVVMANKLIDWLIAQGDCRTREEAMIFAVGLCDNGFMHHVLEKSEFKDEPLLFRFFADEE
MEGSNMKHRLMKHDLKVVENVIAKSLLIKSNEGSYGFGLEDKNKVPIIKLVEKGSNAEMAGMEVGKKIFA
INGDLVFLRPFPEVDCFLKSCLNSRKPLRVLVSTKPRETVKIPDSADGLGFQIRGFGPSVVHAVGRGTVA
AAAGLHPGQCIIKVNGINVSKETHASVIAHVTACRKYKRPMKQDSIQWVYDSLESAQEDIQKSHSKPPGD
GAGDAFECKVEDVIDKFNTMAIIDGKKEHVSLTVDNVHLEYGVVYEYDSTAGTKCNVVEKMVEPKGFFSL
TAKILEALAKSDEHFVQNCTSLNSLNEVIATDLQSKFTSMCSERIEHVCHRISSYGRFSRVLKNRAWPTF
KQAKPKISPLHSSDFCPTNCHVNVMEVSYPKTSTSLGSAFGVQLDSRKHNSHDKENKSVEPGKLSPMVYI
QHTITTMAAPSGLSLGHKDGHGLQYLLKEEDLETQDIYHKLLGKLQTALKEVEMSVCQIDDLLSSITYSP
KLERKTTECVTPMDSDNEKGERNSKRVCFNVAGDEQEDSGHDTVSNRDSYSDCNSNRNSIASFTSICSSQ
CSSYFHSDEMDSGDELPISVRISHDKQDKIHTCLEQLFSQIDSIINLLKGQAVIRAFEQTKYLTPGRGLQ
EFQQEMEAKLSCPRRLRLHLKQDPWNLPSSIQALAQSIRKHAEEVKCRILLALLEYSDSETQLRRDMVFC
QSLVATVCAFSEQLMAALNQMFDNSKENEMETCEASRRWLDQIANAGVLFHFQSLLSPNLKDEQAMLEDT
LVALFDLEKVSFFFKPSEEDPLVANVPLTYQVEGSRQALKVYFYMDSYHFEQLPQRLKNGGGFKIHPVLF
SQALESMEGYCYRDNISVEEFQAQINTASLEKVKQYNQKLRAFYLDKSNSPPNTTSKAAYIDKLMKPLNA
LDELYRLITSFIRSKRIAACVNTPCSASGVGLLSVSSELCDRLGACHIIMCSSGVHRCTLSVTLEQTITL
ARSHGLPPRYIMQAMDVMRKQGARVQNTAKNLGVRDRTPQSAPRLYKLCEPPPPVGEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH