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Report for CCDS6277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6277.1 Public Homo sapiens 8 POP1 24 110 108 CCDS HistoryNCBI Gene:10940Re-query CCDS DB by CCDS ID:6277.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6277.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000349693.3 ENSP00000339529.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000349693.3Link to Ensembl Protein Viewer:ENSP00000339529.3Re-query CCDS DB by Nucleotide ID:ENST00000349693Re-query CCDS DB by Protein ID:ENSP00000339529
Original member Current member EBI ENST00000401707.7 ENSP00000385787.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000401707.7Link to Ensembl Protein Viewer:ENSP00000385787.2Re-query CCDS DB by Nucleotide ID:ENST00000401707Re-query CCDS DB by Protein ID:ENSP00000385787
Original member Current member NCBI NM_001145860.2 NP_001139332.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145860.2Link to Protein Sequence:NP_001139332.1Re-query CCDS DB by Nucleotide ID:NM_001145860Re-query CCDS DB by Protein ID:NP_001139332Link to BLAST:NP_001139332.1
Original member Current member NCBI NM_001145861.2 NP_001139333.1 Accepted alive Link to Nucleotide Sequence:NM_001145861.2Link to Protein Sequence:NP_001139333.1Re-query CCDS DB by Nucleotide ID:NM_001145861Re-query CCDS DB by Protein ID:NP_001139333Link to BLAST:NP_001139333.1
Original member Current member NCBI NM_015029.3 NP_055844.2 Accepted alive Link to Nucleotide Sequence:NM_015029.3Link to Protein Sequence:NP_055844.2Re-query CCDS DB by Nucleotide ID:NM_015029Re-query CCDS DB by Protein ID:NP_055844Link to BLAST:NP_055844.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139332.1 1024 Q99575 1024 100% 0 0
NP_001139333.1 1024 Q99575 1024 100% 0 0
NP_055844.2 1024 Q99575 1024 100% 0 0

Chromosomal Locations for CCDS 6277.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 98123338 98123479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98127595 98127762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98128365 98128540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98129978 98130226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98133949 98134036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98134472 98134659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98136482 98136738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98136861 98136954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98140078 98140189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98140769 98140888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98146568 98146683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98148815 98149006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98150485 98150639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98156050 98156412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98157617 98158271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3075 nt):
ATGTCAAATGCAAAAGAAAGAAAACACGCCAAGAAAATGAGAAACCAGCCTACCAATGTGACTCTGTCCT
CTGGCTTTGTGGCTGACAGAGGTGTAAAGCACCACAGTGGAGGTGAAAAACCTTTCCAAGCTCAAAAACA
AGAGCCTCATCCTGGAACTTCACGACAGCGGCAAACCAGAGTCAACCCCCATTCTCTGCCTGACCCTGAA
GTGAATGAGCAGTCTTCCTCCAAAGGGATGTTTAGAAAAAAGGGAGGATGGAAAGCAGGTCCCGAGGGCA
CGTCTCAGGAGATCCCCAAGTATATAACTGCTTCTACTTTTGCTCAAGCACGAGCTGCTGAAATCAGTGC
TATGTTAAAAGCTGTGACCCAGAAGTCTTCGAATTCACTGGTTTTTCAGACTCTGCCACGGCACATGCGA
CGAAGAGCCATGAGCCACAACGTCAAACGCCTTCCCAGACGGTTACAGGAGATTGCCCAGAAAGAGGCGG
AGAAAGCCGTACATCAGAAAAAAGAACATTCAAAAAATAAATGCCATAAAGCTCGAAGATGTCACATGAA
CCGGACGCTAGAATTTAACCGTAGACAAAAGAAGAACATTTGGTTAGAAACTCACATCTGGCACGCCAAG
CGGTTTCATATGGTCAAGAAGTGGGGCTACTGCCTTGGGGAGAGGCCAACAGTCAAGAGCCACAGAGCCT
GCTATCGAGCCATGACGAACCGGTGCCTCCTGCAGGATTTATCCTATTACTGTTGTTTGGAGTTGAAAGG
CAAAGAGGAAGAAATACTAAAGGCGCTTTCTGGAATGTGTAACATAGACACAGGGCTGACGTTTGCAGCA
GTTCACTGCTTGTCTGGAAAGCGCCAAGGGAGCCTTGTGCTTTATCGGGTGAATAAATATCCCAGAGAAA
TGCTTGGGCCTGTTACGTTTATCTGGAAGTCCCAGAGGACCCCGGGTGACCCTTCTGAGAGCAGGCAGCT
GTGGATCTGGCTGCATCCAACCCTTAAACAGGATATCTTAGAGGAAATAAAAGCAGCGTGCCAGTGTGTG
GAACCCATCAAATCAGCTGTCTGCATCGCTGACCCACTTCCAACACCATCCCAAGAAAAAAGCCAAACTG
AATTGCCTGACGAGAAAATTGGCAAGAAAAGAAAAAGGAAAGATGATGGAGAAAATGCTAAACCAATTAA
AAAAATTATCGGTGATGGAACTAGAGATCCATGTCTACCATACTCTTGGATCTCTCCAACCACAGGCATT
ATAATCAGCGATTTGACGATGGAGATGAACAGATTCCGGCTGATTGGGCCACTTTCCCACTCCATCCTAA
CTGAAGCAATAAAAGCTGCTTCTGTCCACACTGTGGGAGAGGACACAGAGGAGACACCTCACCGCTGGTG
GATAGAAACCTGTAAGAAACCTGACAGCGTTTCCCTTCATTGCAGACAAGAAGCCATTTTCGAGTTGTTG
GGAGGAATAACATCACCAGCAGAAATTCCGGCAGGTACTATTCTGGGACTGACAGTTGGGGATCCTCGAA
TAAATTTGCCCCAAAAGAAGTCCAAAGCTTTGCCCAATCCAGAAAAATGCCAAGATAATGAGAAAGTTAG
ACAGCTGCTTCTGGAGGGTGTGCCTGTGGAATGTACGCATAGCTTTATCTGGAACCAAGATATCTGTAAG
AGTGTCACAGAGAATAAAATCTCGGATCAGGATTTAAACCGGATGAGGAGTGAATTGCTGGTGCCTGGGT
CACAGCTTATTTTAGGTCCCCATGAATCCAAGATACCTATACTTTTGATTCAGCAGCCAGGAAAAGTGAC
TGGTGAAGATCGACTAGGCTGGGGAAGTGGCTGGGATGTCCTACTCCCAAAGGGCTGGGGCATGGCTTTC
TGGATTCCATTTATTTATCGAGGTGTGAGAGTCGGAGGGTTGAAAGAGTCTGCAGTGCATTCTCAGTATA
AGAGGTCGCCTAATGTCCCAGGCGATTTTCCAGACTGCCCTGCCGGGATGCTGTTTGCGGAAGAGCAAGC
TAAGAATCTTCTTGAAAAGTACAAAAGACGCCCTCCTGCAAAACGGCCCAACTACGTTAAGCTTGGCACT
CTGGCACCTTTCTGCTGTCCCTGGGAGCAGTTAACTCAAGACTGGGAGTCAAGAGTCCAGGCTTACGAAG
AACCTTCTGTAGCTTCATCTCCAAATGGTAAGGAGAGTGACCTAAGAAGATCTGAGGTGCCTTGTGCTCC
CATGCCTAAAAAAACTCATCAGCCATCTGATGAAGTGGGCACATCCATAGAGCACCCCAGGGAGGCAGAG
GAGGTAATGGATGCAGGGTGTCAAGAATCGGCAGGGCCTGAGAGGATCACAGACCAGGAGGCCAGTGAAA
ACCATGTTGCTGCCACAGGGAGTCACCTCTGCGTTCTCAGGAGTAGAAAATTACTGAAGCAACTGTCAGC
CTGGTGTGGGCCCAGTTCTGAGGATAGTCGGGGAGGCCGGCGAGCTCCCGGCAGAGGCCAGCAAGGATTG
ACCAGAGAGGCTTGCCTGTCCATCTTGGGCCACTTCCCCAGGGCCCTGGTTTGGGTCAGCCTGTCCCTGC
TCAGCAAGGGCAGCCCCGAGCCTCACACCATGATCTGTGTCCCAGCCAAGGAGGACTTCCTCCAGCTCCA
TGAGGACTGGCATTACTGTGGGCCCCAGGAATCCAAACACAGTGACCCATTCAGGAGCAAGATCCTGAAA
CAGAAAGAGAAGAAGAAAAGGGAGAAGAGGCAGAAGCCAGGACGTGCCTCTTCTGATGGCCCGGCGGGGG
AAGAGCCCGTGGCTGGGCAGGAAGCTCTGACTCTAGGGCTGTGGTCAGGCCCTCTGCCGCGTGTGACGTT
GCACTGCTCCAGAACTCTCCTAGGCTTTGTGACTCAGGGAGATTTTTCCATGGCTGTTGGCTGTGGAGAA
GCCCTGGGGTTTGTTAGCTTGACAGGCTTGCTGGATATGCTGTCCAGCCAGCCTGCAGCGCAGAGGGGCT
TAGTGCTACTGAGGCCTCCCGCCTCTCTGCAGTATCGATTTGCGAGGATTGCTATTGAGGTGTGA

Translation (1024 aa):
MSNAKERKHAKKMRNQPTNVTLSSGFVADRGVKHHSGGEKPFQAQKQEPHPGTSRQRQTRVNPHSLPDPE
VNEQSSSKGMFRKKGGWKAGPEGTSQEIPKYITASTFAQARAAEISAMLKAVTQKSSNSLVFQTLPRHMR
RRAMSHNVKRLPRRLQEIAQKEAEKAVHQKKEHSKNKCHKARRCHMNRTLEFNRRQKKNIWLETHIWHAK
RFHMVKKWGYCLGERPTVKSHRACYRAMTNRCLLQDLSYYCCLELKGKEEEILKALSGMCNIDTGLTFAA
VHCLSGKRQGSLVLYRVNKYPREMLGPVTFIWKSQRTPGDPSESRQLWIWLHPTLKQDILEEIKAACQCV
EPIKSAVCIADPLPTPSQEKSQTELPDEKIGKKRKRKDDGENAKPIKKIIGDGTRDPCLPYSWISPTTGI
IISDLTMEMNRFRLIGPLSHSILTEAIKAASVHTVGEDTEETPHRWWIETCKKPDSVSLHCRQEAIFELL
GGITSPAEIPAGTILGLTVGDPRINLPQKKSKALPNPEKCQDNEKVRQLLLEGVPVECTHSFIWNQDICK
SVTENKISDQDLNRMRSELLVPGSQLILGPHESKIPILLIQQPGKVTGEDRLGWGSGWDVLLPKGWGMAF
WIPFIYRGVRVGGLKESAVHSQYKRSPNVPGDFPDCPAGMLFAEEQAKNLLEKYKRRPPAKRPNYVKLGT
LAPFCCPWEQLTQDWESRVQAYEEPSVASSPNGKESDLRRSEVPCAPMPKKTHQPSDEVGTSIEHPREAE
EVMDAGCQESAGPERITDQEASENHVAATGSHLCVLRSRKLLKQLSAWCGPSSEDSRGGRRAPGRGQQGL
TREACLSILGHFPRALVWVSLSLLSKGSPEPHTMICVPAKEDFLQLHEDWHYCGPQESKHSDPFRSKILK
QKEKKKREKRQKPGRASSDGPAGEEPVAGQEALTLGLWSGPLPRVTLHCSRTLLGFVTQGDFSMAVGCGE
ALGFVSLTGLLDMLSSQPAAQRGLVLLRPPASLQYRFARIAIEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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