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Report for CCDS27861.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27861.1 Public Mus musculus 15 Krt5 23 108 98 CCDS HistoryNCBI Gene:110308Re-query CCDS DB by CCDS ID:27861.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27861.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023709.6 ENSMUSP00000023709.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023709.6Link to Ensembl Protein Viewer:ENSMUSP00000023709.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023709Re-query CCDS DB by Protein ID:ENSMUSP00000023709
Original member Current member NCBI NM_027011.3 NP_081287.1 Accepted alive Link to Nucleotide Sequence:NM_027011.3Link to Protein Sequence:NP_081287.1Re-query CCDS DB by Nucleotide ID:NM_027011Re-query CCDS DB by Protein ID:NP_081287Link to BLAST:NP_081287.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081287.1 580 Q922U2 580 100% 0 0

Chromosomal Locations for CCDS 27861.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 101707436 101707722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101708117 101708151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101708876 101709096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101709753 101709878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101710251 101710415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101710536 101710631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101710739 101710799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101711529 101711743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101712274 101712810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1743 nt):
ATGTCTCGCCAGTCCAGTGTGTCCTTCCGAAGTGGGGGCAGCCGCTCTTTCAGCGCCGCCTCTGCCATCA
CCCCATCTGTCTCTCGTACGAGCTTCAGCTCGGTGTCCCGCAGTGGTGGTGGTGGTGGTGGCAGGATCAG
CCTTGGGGGTGCTTGTGGAGCCGGGGGCTATGGCAGCCGGAGCCTGTACAATGTGGGGGGCTCCAAAAGG
ATATCCTACAGTTCTGGCGGAGGCAGCTTCAGGAACCAATTTGGTGCTGGTGGCTTTGGCTTTGGAGGAG
GAGCCGGCAGTGGATTTGGTTTTGGTGGTGGAGCTGGTAGTGGCTTTGGCTTCGGTGGTGGAGCTGGCTT
TGGTGGTGGCTATGGGGGAGCTGGCTTCCCGGTGTGCCCACCTGGAGGCATCCAAGAGGTCACCGTTAAC
CAGAACCTCCTCACCCCTCTGAACCTGCAAATCGACCCCACCATCCAGCGGGTCAGGACTGAGGAGAGGG
AGCAGATCAAGACCCTCAACAACAAGTTTGCCTCCTTCATCGACAAGGTGCGGTTCCTGGAGCAGCAGAA
CAAGGTCCTGGACACCAAGTGGGCCCTGCTGCAGGAGCAGGGCACCAAGACCATAAAGCAGAACCTGGAT
CCGTTGTTTGAACAGTACATTAACAACCTCCGTAGACAGCTGGACGGGGTTCTGGGGGAGAGGGGCCGCC
TGGACTCAGAGCTGAGGAACATGCAGGACCTGGTGGAGGACTACAAGAACAAGTATGAGGATGAGATCAA
CAAGCGTACCACGGCTGAGAATGAGTTTGTGATGTTGAAGAAGGATGTGGATGCTGCCTACATGAACAAG
GTGGAGCTGGAGGCCAGGGTCGATGCCCTGATGGACGAGATCAACTTCATGAAGATGTTCTTTGATGCGG
AGCTGTCCCAGATGCAGACACACGTCTCTGACACATCTGTGGTCCTTTCCATGGACAACAACCGCAGCCT
GGACCTGGACAGCATCATCGCTGAGGTCAAGGCCCAGTACGAGGACATTGCCAACCGCAGCCGAACAGAG
GCTGAGTCCTGGTACCAGACCAAGTATGAGGAGCTGCAACAGACAGCTGGCCGTCATGGCGATGACCTTC
GAAACACCAAGCACGAGATCTCTGAGATGAACCGAATGATCCAGAGGCTGAGATCTGAAATTGACAACGT
CAAGAAGCAGTGTGCCAACCTCCAGAACGCCATTGCTGAAGCTGAGCAACGCGGGGAGCTGGCTCTCAAA
GATGCCAGAAACAAGCTGACAGAGCTGGAGGAGGCCCTGCAGAAGGCCAAGCAGGACATGGCCAGGCTGC
TGCGGGAGTACCAGGAGCTCATGAACACCAAGCTGGCTCTGGACGTGGAGATCGCCACCTACAGGAAGCT
GCTGGAGGGCGAGGAGTGCAGGCTGAGTGGGGAAGGAGTTGGACCAGTCAACATCTCTGTCGTTACAAAC
AGTGTCTCTTCTGGCTACGGAGGAGGCAGCAGCATTGGTGTTGGCAGTGGCTTTGGCGGTGGCCTTGGCA
GCGGCTTTGCTGGTGGCCTTGGCCCACGCTTCACCAGGGGTGGTGGGGGTCTTGGTTTGGGTAGCGGGCT
AAGTGTGGGGGGCTCTGGCTTCAGTGCAGGCAGCAGTCAAGGAGGCATGAGCTTCGGCAGTGGTGGTGGC
AGCGGCTCCAGTGTCAAATTTGTCTCCACCACCTCCTCCTCCCGGAGGAGCTTCAAGAGCTAA

Translation (580 aa):
MSRQSSVSFRSGGSRSFSAASAITPSVSRTSFSSVSRSGGGGGGRISLGGACGAGGYGSRSLYNVGGSKR
ISYSSGGGSFRNQFGAGGFGFGGGAGSGFGFGGGAGSGFGFGGGAGFGGGYGGAGFPVCPPGGIQEVTVN
QNLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTKWALLQEQGTKTIKQNLD
PLFEQYINNLRRQLDGVLGERGRLDSELRNMQDLVEDYKNKYEDEINKRTTAENEFVMLKKDVDAAYMNK
VELEARVDALMDEINFMKMFFDAELSQMQTHVSDTSVVLSMDNNRSLDLDSIIAEVKAQYEDIANRSRTE
AESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRSEIDNVKKQCANLQNAIAEAEQRGELALK
DARNKLTELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKLLEGEECRLSGEGVGPVNISVVTN
SVSSGYGGGSSIGVGSGFGGGLGSGFAGGLGPRFTRGGGGLGLGSGLSVGGSGFSAGSSQGGMSFGSGGG
SGSSVKFVSTTSSSRRSFKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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