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Report for CCDS41295.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41295.1 Public Homo sapiens 1 RCC1 24 110 108 CCDS HistoryNCBI Gene:1104Re-query CCDS DB by CCDS ID:41295.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 41295.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373831.7 ENSP00000362937.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373831.7Link to Ensembl Protein Viewer:ENSP00000362937.3Re-query CCDS DB by Nucleotide ID:ENST00000373831Re-query CCDS DB by Protein ID:ENSP00000362937
Original member Current member EBI ENST00000649185.1 ENSP00000497402.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649185.1Link to Ensembl Protein Viewer:ENSP00000497402.1Re-query CCDS DB by Nucleotide ID:ENST00000649185Re-query CCDS DB by Protein ID:ENSP00000497402
Original member Current member NCBI NM_001048194.4 NP_001041659.1 Accepted alive Link to Nucleotide Sequence:NM_001048194.4Link to Protein Sequence:NP_001041659.1Re-query CCDS DB by Nucleotide ID:NM_001048194Re-query CCDS DB by Protein ID:NP_001041659Link to BLAST:NP_001041659.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001041659.1 452 P18754-2 452 100% 0 0

Chromosomal Locations for CCDS 41295.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 28529867 28529939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28530523 28530615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28531803 28531990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28532171 28532350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28535050 28535146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28535258 28535380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28535871 28536026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28536262 28536381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28536747 28536899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28537832 28538007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGTCACCCAAGCGCATAGCTAAAAGAAGGTCCCCCCCAGCAGATGCCATCCCCAAAAGCAAGAAGGTGA
AGGACACGAGGGCCGCTGCCTCCCGCCGCGTTCCTGGCGCCCGCTCCTGCCAAGGTGCCTGCGGGCCGAG
CCCTCCTGACCAGAAAACCCGACCAGTCTCACACAGGTCCCACAGCACAGAACCCGGCTTGGTGCTGACA
CTAGGCCAGGGCGACGTGGGCCAGCTGGGGCTGGGTGAGAATGTGATGGAGAGGAAGAAGCCGGCCCTGG
TATCCATTCCGGAGGATGTTGTGCAGGCTGAGGCTGGGGGCATGCACACCGTGTGTCTAAGCAAAAGTGG
CCAGGTCTATTCCTTCGGCTGCAATGATGAGGGTGCCCTGGGAAGGGACACATCAGTGGAGGGCTCGGAG
ATGGTCCCTGGGAAAGTGGAGCTGCAAGAGAAGGTGGTACAGGTGTCAGCAGGAGACAGTCACACAGCAG
CCCTCACCGATGATGGCCGTGTCTTCCTCTGGGGCTCCTTCCGGGACAATAACGGTGTGATTGGACTGTT
GGAGCCCATGAAGAAGAGCATGGTGCCTGTGCAGGTGCAGCTGGATGTGCCTGTGGTAAAGGTGGCCTCA
GGAAACGACCACTTGGTGATGCTGACAGCTGATGGTGACCTCTACACCTTGGGCTGCGGGGAACAGGGCC
AGCTAGGCCGTGTGCCTGAGTTATTTGCCAACCGTGGTGGCCGGCAAGGCCTCGAACGACTCCTGGTCCC
CAAGTGTGTGATGCTGAAATCCAGGGGAAGCCGGGGCCACGTGAGATTCCAGGATGCCTTTTGTGGTGCC
TATTTCACCTTTGCCATCTCCCATGAGGGCCACGTGTACGGCTTCGGCCTCTCCAACTACCATCAGCTTG
GAACTCCGGGCACAGAATCTTGCTTCATACCCCAGAACCTAACATCCTTCAAGAATTCCACCAAGTCCTG
GGTGGGCTTCTCTGGTGGCCAGCACCATACAGTCTGCATGGATTCGGAAGGAAAAGCATACAGCCTGGGC
CGGGCTGAGTATGGGCGGCTGGGCCTTGGAGAGGGTGCTGAGGAGAAGAGCATACCCACCCTCATCTCCA
GGCTGCCTGCTGTCTCCTCGGTGGCTTGTGGGGCCTCTGTGGGGTATGCTGTGACCAAGGATGGTCGTGT
TTTCGCCTGGGGCATGGGCACCAACTACCAGCTGGGCACAGGGCAGGATGAGGACGCCTGGAGCCCTGTG
GAGATGATGGGCAAACAGCTGGAGAACCGTGTGGTCTTATCTGTGTCCAGCGGGGGCCAGCATACAGTCT
TATTAGTCAAGGACAAAGAACAGAGCTGA

Translation (452 aa):
MSPKRIAKRRSPPADAIPKSKKVKDTRAAASRRVPGARSCQGACGPSPPDQKTRPVSHRSHSTEPGLVLT
LGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSE
MVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVAS
GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGA
YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLG
RAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPV
EMMGKQLENRVVLSVSSGGQHTVLLVKDKEQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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