NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS84262.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84262.1 Public Mus musculus 16 Ifnar2 23 108 98 CCDS HistoryNCBI Gene:15976Re-query CCDS DB by CCDS ID:84262.1Re-query CCDS DB by GeneID:15976See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84262.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089042.6 ENSMUSP00000086443.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089042.6Link to Ensembl Protein Viewer:ENSMUSP00000086443.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000089042Re-query CCDS DB by Protein ID:ENSMUSP00000086443
Original member Current member NCBI NM_001347258.1 NP_001334187.1 Accepted alive Link to Nucleotide Sequence:NM_001347258.1Link to Protein Sequence:NP_001334187.1Re-query CCDS DB by Nucleotide ID:NM_001347258Re-query CCDS DB by Protein ID:NP_001334187Link to BLAST:NP_001334187.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334187.1 247 O35664-2 247 100% 0 0

Chromosomal Locations for CCDS 84262.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 91383899 91383953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91384983 91385024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91385942 91386065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91387944 91388116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91391721 91391878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91393757 91393913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91403710 91403744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGCGTTCACGGTGCACCGTCTCTGCCGTCGGTCTCCTCAGCTTGTGTCTTGTGGTGTCTGCGAGCCTAG
AGACTATCACACCGTCTGCTTTTGATGGGTATCCAGATGAACCTTGCACTATAAACATAACAATACGAAA
TTCCCGGCTAATTTTATCCTGGGAATTAGAGAACAAGTCTGGCCCACCCGCTAACTACACCCTCTGGTAC
ACAGTCATGAGCAAAGACGAAAATCTGACGAAGGTTAAGAACTGTTCAGATACCACGAAGTCATCATGTG
ACGTGACAGATAAGTGGTTGGAGGGCATGGAGAGCTACGTCGTCGCCATCGTCATAGTGCACAGAGGGGA
CTTGACCGTGTGCCGCTGCTCAGACTACATCGTGCCTGCAAACGCTCCTCTTGAGCCGCCAGAATTTGAG
ATCGTTGGCTTTACAGACCACATAAACGTGACGATGGAATTTCCACCTGTCACTTCCAAAATAATCCAGG
AAAAGATGAAGACTACACCCTTTGTCATCAAAGAACAGATAGGGGACAGCGTTAGGAAGAAGCACGAGCC
CAAAGTGAATAATGTCACTGGGAACTTCACATTTGTCCTTAGAGACTTACTTCCAAAGACAAACTACTGT
GTATCTCTTTATTTTGATGATGACCCCGCAATAAAATCTCCCTTAAAATGCATCGTCCTTCAGCCTGGCC
AGGAATCAGAACTTCCGCCACTTTTTAACCTGGATAATCCCTGA

Translation (247 aa):
MRSRCTVSAVGLLSLCLVVSASLETITPSAFDGYPDEPCTINITIRNSRLILSWELENKSGPPANYTLWY
TVMSKDENLTKVKNCSDTTKSSCDVTDKWLEGMESYVVAIVIVHRGDLTVCRCSDYIVPANAPLEPPEFE
IVGFTDHINVTMEFPPVTSKIIQEKMKTTPFVIKEQIGDSVRKKHEPKVNNVTGNFTFVLRDLLPKTNYC
VSLYFDDDPAIKSPLKCIVLQPGQESELPPLFNLDNP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH