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Report for CCDS19515.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19515.1 Public Mus musculus 5 Dgkq 23 108 98 CCDS HistoryNCBI Gene:110524Re-query CCDS DB by CCDS ID:19515.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19515.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053913.12 ENSMUSP00000057859.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053913.12Link to Ensembl Protein Viewer:ENSMUSP00000057859.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000053913Re-query CCDS DB by Protein ID:ENSMUSP00000057859
Original member Current member NCBI NM_199011.2 NP_950176.1 Accepted alive Link to Nucleotide Sequence:NM_199011.2Link to Protein Sequence:NP_950176.1Re-query CCDS DB by Nucleotide ID:NM_199011Re-query CCDS DB by Protein ID:NP_950176Link to BLAST:NP_950176.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_950176.1 934 Q6P5E8-1 934 100% 0 0

Chromosomal Locations for CCDS 19515.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 108648710 108648811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108649145 108649297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108649378 108649489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108649587 108649733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108649825 108649925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108650201 108650379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108650490 108650638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108650817 108650968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108652394 108652509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108653181 108653219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108653636 108653786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108654084 108654145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108654356 108654410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108654544 108654634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108654716 108654936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108655108 108655208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108655290 108655364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108655440 108655593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108655844 108655969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108656046 108656131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108656424 108656523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108658206 108658285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108660443 108660695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2805 nt):
ATGGCGGCGGCAGCCGAGCCCGGTGCCCGGACCTGGCCGGGCAGTGGTTCCCCACGTCTTGGCAGCCCGG
CCGGCAGTCCAGTGCTGGGCATCTCGGGCCGCACACGCCCGGGGTCAGGGCCGGAGCGGACTAGCAGAGC
TATTGGCTCCGCAGCACCTGGCCACAGCTTTCGCAAGGTGACACTCACCAAGCCTACCTTCTGCCACCTC
TGCTCGGACTTCATCTGGGGACTGGCTGGCTTCCTGTGCGATGTCTGCAACTTCATGTCCCATGAGAAGT
GCCTGAAGCAGGTGAAGACCCCGTGCACAAGCATTGCACCAAGCCTCGTCCGGGTGCCTGTAGCCCACTG
CTTTGGTTCCCTTGGTCTCTACAAGCGCAAGTTCTGTGTGGTCTGCCGCAAGAGCCTGGAGGTACCCGCA
TTCCGCTGTGAAGTGTGTGAGCTGCACGTTCACCCCGACTGTGTGCCCTTCGCCTGCAGCGACTGTCGTC
AGTGCCACCAGGATGGACAGCAGGATTATGACACGTATCACCACCACTGGAGGGAGGGGAACCTGCCTTC
TGGTGCACGATGTGAGGTCTGTAGGAAGACTTGTGGTTCCTCAGATGTGCTGGCTGGTGTACGCTGCGAG
TGGTGTGGTGTACAGGCTCACTCAGTGTGCTCCACAGCACTTGCGCCTGAGTGTACATTTGGACGTCTAC
GCTCCATGGTACTGCCTCCTTCGTGTGTGCGCCTGTTGTCCCGAAACTTCAGCAAGATGCACTGTTTCCG
AATCCCTGAGACCATGGTCCTGGAGCTTGGTGATGGGGATGATGGCGTAGACGGGAGTGCTGCTATAGGC
ACAGGCAGAGAGGTACTGACAGCTACAGAGTCCACCAAACAGACCCTGAAGATCTTTGATGGCAACGACT
CCATGAGGAAAAATCAGTTTCGTCTGGTTACAGTTTCCCGCCTGGCTCGGAATGAGGAAGTGATGGAGGC
AGCACTTCGGGCCTACTATATTAGCGAGGACCCTAAGGACTTCCAGCTGCAGGCACTGCCCCTGTCTGGC
AATGCCCAGGCTCTGGGGAAGGCTGGGACCACTGAGGAGGAGGCTAGTAAAGGCTCTTGTCCCCGGGATT
CCGTGCCTGAGGCCTGGGTCATCAGGTCTTTGCCTCGTACCCAAGAGATCCTGAAGATCTACCCTGGCTG
GCTCAAGGTAGGTGTGGCCTACGTGTCCATCCGTGTGAACTCCCAGAGTACAGCACGGTCTGTGGTTCAA
GAGGTTCTCCCACTGTTTGGACAACAGGTTGAGGATAAGGAGAGATTCCAGCTGATTGAGGTGCTCATGA
GCAGCAGACAAGTCCAACGGACCGTGCTGGCAGATGAAGAACCTCTGCTAGACCGACTCTGGGACATCCG
ACAGACTTCTGTGCGCCAGGTGAGCCAGACGCGGTTCTACGTGGCCGAGACCAGGGCCACGGCCCCACGT
GTCTCCCTGTTCGTGGGTGGCCTGCCACCTGGCTTGTCCCCCCAGGATTACAGCAACCTGCTGCATGAGG
CCATGGCCACCAAAGCTGCTGTGGTGTCTGTGAGTCACGTCTACTCCTTACAAGGTGCAGTAATTCTGGA
CGTCACCTGCTTCGCGGAGGCTGAGCGGCTATACATGCTGGCCAGGGACACAGCAGTGCATGGCCGGCCA
CTGACTGCATTAGTGCTTCCAGATGTGCTGCACACGAAGCTGCCTCCTGACTGCTGCCCTCTCCTCGTGT
TTGTGAACCCCAAGAGTGGGGGTCTCAAGGGACGAGAACTGCTCTGCAGTTTCCGGAAGCTGCTGAATCC
GCACCAGGTCTTTGAGCTAACCAACGGGGGCCCTCTTCCTGGGTTCCACCTTTTCTCCCAGGTGCCCAGT
TTTCGGGTACTGGTGTGTGGTGGAGATGGCACCGTTGGCTGGGTGCTCGCTGCCCTGGAGGAGACAAGGC
GCCATCTGGCCTGTCCAGAGCCATCTGTGGCCATCTTGCCCCTGGGTACAGGGAATGACCTTGGCCGGGT
CCTTCGTTGGGGGGCAGGCTATAGTGGTGAGGACCCATTTTCTGTGCTGGTGTCGGTGGATGAGGCTGAT
GCTGTGCTCATGGATCGATGGACAATCCTGCTGGATGCTCATGAAATTGATAGTACAGAGAACAATGTGG
TAGAAACAGAGCCCCCCAAGATTGTTCAGATGAATAACTACTGTGGCATTGGTATTGATGCGGAGCTCAG
CCTGGACTTCCACCAGGCACGTGAAGAGGAGCCTGGCAAATTCACAAGCAGGTTCCACAACAAGGGCGTG
TATGTGCGGGTCGGGCTGCAGAAGATCAGCCACTCTCGAAGCCTACACAAGGAGATCCGGCTGCAGGTGG
AGCAGCAGGAGGTGGAGCTACCCAGCATTGAGGGTCTCATCTTCATTAACATCCCCAGCTGGGGCTCAGG
GGCCGACTTGTGGGGCTCTGACAACGACTCAAGGTTTGAGAAGCCACGCATAGACGACGGGCTGTTGGAG
GTGGTGGGTGTGACAGGTGTCGTGCACATGGGCCAGGTACAAGGTGGGCTACGCTCTGGAATCCGCATTG
CCCAGGGCTCCTACTTCCGTGTCACACTCCTCAAGGCTACTCCAGTGCAGGTGGATGGTGAGCCCTGGGT
TCAGGCCCCAGGTCACATGATCATCTCTGCTACTGCACCTAAGGTTCACATGCTGAGAAAGGCTAAGCAG
AAGCCCAGGAAGGCTGGCGCCAACAGGGATACCCGAGTGGACACCTTGCCTGCTCCTGAGGGCAATCCTT
TATAG

Translation (934 aa):
MAAAAEPGARTWPGSGSPRLGSPAGSPVLGISGRTRPGSGPERTSRAIGSAAPGHSFRKVTLTKPTFCHL
CSDFIWGLAGFLCDVCNFMSHEKCLKQVKTPCTSIAPSLVRVPVAHCFGSLGLYKRKFCVVCRKSLEVPA
FRCEVCELHVHPDCVPFACSDCRQCHQDGQQDYDTYHHHWREGNLPSGARCEVCRKTCGSSDVLAGVRCE
WCGVQAHSVCSTALAPECTFGRLRSMVLPPSCVRLLSRNFSKMHCFRIPETMVLELGDGDDGVDGSAAIG
TGREVLTATESTKQTLKIFDGNDSMRKNQFRLVTVSRLARNEEVMEAALRAYYISEDPKDFQLQALPLSG
NAQALGKAGTTEEEASKGSCPRDSVPEAWVIRSLPRTQEILKIYPGWLKVGVAYVSIRVNSQSTARSVVQ
EVLPLFGQQVEDKERFQLIEVLMSSRQVQRTVLADEEPLLDRLWDIRQTSVRQVSQTRFYVAETRATAPR
VSLFVGGLPPGLSPQDYSNLLHEAMATKAAVVSVSHVYSLQGAVILDVTCFAEAERLYMLARDTAVHGRP
LTALVLPDVLHTKLPPDCCPLLVFVNPKSGGLKGRELLCSFRKLLNPHQVFELTNGGPLPGFHLFSQVPS
FRVLVCGGDGTVGWVLAALEETRRHLACPEPSVAILPLGTGNDLGRVLRWGAGYSGEDPFSVLVSVDEAD
AVLMDRWTILLDAHEIDSTENNVVETEPPKIVQMNNYCGIGIDAELSLDFHQAREEEPGKFTSRFHNKGV
YVRVGLQKISHSRSLHKEIRLQVEQQEVELPSIEGLIFINIPSWGSGADLWGSDNDSRFEKPRIDDGLLE
VVGVTGVVHMGQVQGGLRSGIRIAQGSYFRVTLLKATPVQVDGEPWVQAPGHMIISATAPKVHMLRKAKQ
KPRKAGANRDTRVDTLPAPEGNPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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