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Report for CCDS35607.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35607.1 Public Mus musculus 1 Pecr 23 108 98 CCDS HistoryNCBI Gene:111175Re-query CCDS DB by CCDS ID:35607.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35607.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027381.12 ENSMUSP00000027381.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027381.12Link to Ensembl Protein Viewer:ENSMUSP00000027381.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027381Re-query CCDS DB by Protein ID:ENSMUSP00000027381
Original member Current member NCBI NM_023523.6 NP_076012.3 Accepted alive Link to Nucleotide Sequence:NM_023523.6Link to Protein Sequence:NP_076012.3Re-query CCDS DB by Nucleotide ID:NM_023523Re-query CCDS DB by Protein ID:NP_076012Link to BLAST:NP_076012.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076012.3 303 Q99MZ7 303 100% 0 0

Chromosomal Locations for CCDS 35607.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 72259348 72259433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72261952 72262063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72267407 72267517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72270277 72270373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72274886 72274967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72276166 72276331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72277287 72277420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72284093 72284216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGGGCTCTTGGAAGACTGGTCAGAGCTACCTAGCGGCCGGGTTGCTGAAGAACCAAGTGGCCGTGGTCA
CCGGCGGGGGCACAGGCATTGGAAAAGCCGTCTCCCGGGAGCTCCTGCACCTGGGGTGTAACGTGGTCAT
TGCTTCCCGGAAGCTGGACAGACTAACTGCTGCTGTGGATGAACTGAGAGCCTCTCTGCCTCCCTCCAGC
TCCGCTGAAGTCTCCGCCATACAGTGCAACATCAGGAAAGAAGAAGAGGTGAGTAATCTGGTCAAATCTA
CCTTAGCTAAGTATGGTAAGATCAACTTCTTGGTCAACAATGGAGGAGGCCAGTTCATGGCTCCTGTGGA
AGACATCACTGCGAAGGGATGGCATGCTGTGATAGAAACCAACCTGACAGGCACCTTCTACATGTGCAAA
GAAGTTTACAATTCCTGGATGAGAGAGCACGGAGGGTCGATTGTCAATATCATTGTCCTTCTTAATAATG
GGTTTCCAACAGCCGCGCACACTGGAGCGGCAAGAGAAGGTGTTTACAACCTCACAAAATCCATGGCTTT
GGCGTGGGCCAGCAGCGGAGTGAGGATCAACTGTGTCGCTCCTGGGACCATTTACTCCCAGACTGCTGTT
GACAACTATGGCGAAATGGGACAAACCTTATTTGAGATGGCCTTTGACAGTATCCCAGCTAAGCGCCTTG
GAGTCCCCGAGGAGATCTCCCCTCTGGTATGTTTCCTGCTGTCCCCTGCGGCTTCCTATATCACTGGACA
GTTGATCAATGTGGATGGAGGCCAGGCTCTGTACACTCACGCCTTCAGCATACCGGATCATGACAACTGG
CCTGTAGGAGCTGGGGACCTTTCTATTGTCAAGAGGATAAAGGAATCTTTTAAGAAGAAAGCCAAGCTCT
AA

Translation (303 aa):
MGSWKTGQSYLAAGLLKNQVAVVTGGGTGIGKAVSRELLHLGCNVVIASRKLDRLTAAVDELRASLPPSS
SAEVSAIQCNIRKEEEVSNLVKSTLAKYGKINFLVNNGGGQFMAPVEDITAKGWHAVIETNLTGTFYMCK
EVYNSWMREHGGSIVNIIVLLNNGFPTAAHTGAAREGVYNLTKSMALAWASSGVRINCVAPGTIYSQTAV
DNYGEMGQTLFEMAFDSIPAKRLGVPEEISPLVCFLLSPAASYITGQLINVDGGQALYTHAFSIPDHDNW
PVGAGDLSIVKRIKESFKKKAKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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