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Report for CCDS30046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30046.1 Public Mus musculus X Timp1 23 108 98 CCDS HistoryNCBI Gene:21857Re-query CCDS DB by CCDS ID:30046.1Re-query CCDS DB by GeneID:21857See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30046.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009530.4 ENSMUSP00000009530.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009530.4Link to Ensembl Protein Viewer:ENSMUSP00000009530.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000009530Re-query CCDS DB by Protein ID:ENSMUSP00000009530
Original member Current member EBI ENSMUST00000115342.9 ENSMUSP00000110999.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115342.9Link to Ensembl Protein Viewer:ENSMUSP00000110999.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115342Re-query CCDS DB by Protein ID:ENSMUSP00000110999
Original member NCBI NM_001044384.1 NP_001037849.1 Updated not alive Link to Nucleotide Sequence:NM_001044384.1Link to Protein Sequence:NP_001037849.1Re-query CCDS DB by Nucleotide ID:NM_001044384Re-query CCDS DB by Protein ID:NP_001037849
Current member NCBI NM_001044384.2 NP_001037849.1 Accepted alive Link to Nucleotide Sequence:NM_001044384.2Link to Protein Sequence:NP_001037849.1Re-query CCDS DB by Nucleotide ID:NM_001044384Re-query CCDS DB by Protein ID:NP_001037849Link to BLAST:NP_001037849.1
Original member NCBI NM_011593.2 NP_035723.2 Updated not alive Link to Nucleotide Sequence:NM_011593.2Link to Protein Sequence:NP_035723.2Re-query CCDS DB by Nucleotide ID:NM_011593Re-query CCDS DB by Protein ID:NP_035723
Current member NCBI NM_011593.3 NP_035723.2 Accepted alive Link to Nucleotide Sequence:NM_011593.3Link to Protein Sequence:NP_035723.2Re-query CCDS DB by Nucleotide ID:NM_011593Re-query CCDS DB by Protein ID:NP_035723Link to BLAST:NP_035723.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001037849.1 205 P12032 205 100% 0 0
NP_035723.2 205 P12032 205 100% 0 0

Chromosomal Locations for CCDS 30046.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 20871039 20871162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20872777 20872856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20873050 20873176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20873368 20873492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20874471 20874632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGATGGCCCCCTTTGCATCTCTGGCATCTGGCATCCTCTTGTTGCTATCACTGATAGCTTCCAGTAAGG
CCTGTAGCTGTGCCCCACCCCACCCACAGACAGCCTTCTGCAACTCGGACCTGGTCATAAGGGCTAAATT
CATGGGTTCCCCAGAAATCAACGAGACCACCTTATACCAGCGTTATAAGATCAAGATGACTAAGATGCTA
AAAGGATTCAAGGCTGTGGGAAATGCCGCAGATATCCGGTACGCCTACACCCCAGTCATGGAAAGCCTCT
GTGGATATGCCCACAAGTCCCAGAACCGCAGTGAAGAGTTTCTCATCACGGGCCGCCTAAGGAACGGAAA
TTTGCACATCAGTGCCTGCAGCTTCTTGGTTCCCTGGCGTACTCTGAGCCCTGCTCAGCAAAGAGCTTTC
TCAAAGACCTATAGTGCTGGCTGTGGGGTGTGCACAGTGTTTCCCTGTTTATCTATCCCTTGCAAACTGG
AGAGTGACACTCACTGTTTGTGGACGGATCAGGTCCTCGTGGGCTCTGAGGACTACCAGAGCCGTCACTT
TGCTTGCCTGCCACGGAATCCAGGCTTGTGCACCTGGAGATCCCTTGGGGCCCGATGA

Translation (205 aa):
MMAPFASLASGILLLLSLIASSKACSCAPPHPQTAFCNSDLVIRAKFMGSPEINETTLYQRYKIKMTKML
KGFKAVGNAADIRYAYTPVMESLCGYAHKSQNRSEEFLITGRLRNGNLHISACSFLVPWRTLSPAQQRAF
SKTYSAGCGVCTVFPCLSIPCKLESDTHCLWTDQVLVGSEDYQSRHFACLPRNPGLCTWRSLGAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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