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Report for CCDS9170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9170.1 Public Homo sapiens 12 SDSL 24 110 108 CCDS HistoryNCBI Gene:113675Re-query CCDS DB by CCDS ID:9170.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9170.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345635.8 ENSP00000341117.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000345635.8Link to Ensembl Protein Viewer:ENSP00000341117.4Re-query CCDS DB by Nucleotide ID:ENST00000345635Re-query CCDS DB by Protein ID:ENSP00000341117
Original member Current member EBI ENST00000403593.9 ENSP00000385790.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000403593.9Link to Ensembl Protein Viewer:ENSP00000385790.4Re-query CCDS DB by Nucleotide ID:ENST00000403593Re-query CCDS DB by Protein ID:ENSP00000385790
Original member Current member NCBI NM_001304993.2 NP_001291922.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001304993.2Link to Protein Sequence:NP_001291922.1Re-query CCDS DB by Nucleotide ID:NM_001304993Re-query CCDS DB by Protein ID:NP_001291922Link to BLAST:NP_001291922.1
Original member Current member NCBI NM_138432.4 NP_612441.1 Accepted alive Link to Nucleotide Sequence:NM_138432.4Link to Protein Sequence:NP_612441.1Re-query CCDS DB by Nucleotide ID:NM_138432Re-query CCDS DB by Protein ID:NP_612441Link to BLAST:NP_612441.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291922.1 329 Q96GA7 329 100% 0 0
NP_612441.1 329 Q96GA7 329 100% 0 0

Chromosomal Locations for CCDS 9170.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 113427983 113428156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113428420 113428459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113429160 113429299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113434134 113434222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113435329 113435556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113436751 113436875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113437886 113438079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGACGGCCCTGTGGCAGAGCATGCCAAGCAGGAGCCCTTTCACGTGGTCACACCTCTGTTGGAGAGCT
GGGCGCTGTCCCAGGTGGCGGGCATGCCTGTCTTCCTCAAGTGTGAGAATGTGCAGCCCAGCGGCTCCTT
CAAGATTCGGGGCATTGGGCATTTCTGCCAGGAGATGGCCAAGAAGGGATGCAGACACCTGGTGTGCTCC
TCAGGGGGTAATGCGGGCATCGCTGCTGCCTATGCTGCTAGGAAGCTGGGCATTCCTGCCACCATCGTGC
TCCCCGAGAGCACCTCCCTGCAGGTGGTGCAGAGGCTGCAGGGGGAGGGGGCCGAGGTTCAGCTGACTGG
AAAGGTCTGGGACGAGGCCAATCTGAGGGCGCAAGAGTTGGCCAAGAGGGACGGCTGGGAGAATGTCCCC
CCGTTTGACCACCCCCTAATATGGAAAGGCCACGCCAGCCTGGTGCAGGAGCTGAAAGCAGTGCTGAGGA
CCCCACCAGGTGCCCTGGTGCTGGCAGTTGGGGGTGGGGGTCTCCTGGCCGGGGTGGTGGCTGGCCTGCT
GGAGGTGGGCTGGCAGCATGTACCCATCATTGCCATGGAGACCCATGGGGCACACTGCTTCAATGCGGCC
ATCACAGCCGGCAAGCTGGTCACACTTCCAGACATCACCAGTGTGGCCAAGAGCCTGGGTGCCAAGACGG
TGGCCGCTCGGGCCCTGGAGTGCATGCAGGTGTGCAAGATTCACTCTGAAGTGGTGGAGGACACCGAGGC
TGTGAGCGCTGTGCAGCAGCTCCTGGATGATGAGCGTATGCTGGTGGAGCCTGCCTGTGGGGCAGCCTTA
GCAGCCATCTACTCAGGCCTCCTGCGGAGGCTCCAGGCCGAGGGCTGCCTGCCCCCTTCCCTGACTTCAG
TTGTGGTAATCGTGTGTGGAGGCAACAACATCAACAGCCGAGAGCTGCAGGCTTTGAAAACCCACCTGGG
CCAGGTCTGA

Translation (329 aa):
MDGPVAEHAKQEPFHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGCRHLVCS
SGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEANLRAQELAKRDGWENVP
PFDHPLIWKGHASLVQELKAVLRTPPGALVLAVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFNAA
ITAGKLVTLPDITSVAKSLGAKTVAARALECMQVCKIHSEVVEDTEAVSAVQQLLDDERMLVEPACGAAL
AAIYSGLLRRLQAEGCLPPSLTSVVVIVCGGNNINSRELQALKTHLGQV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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