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Report for CCDS89911.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89911.1 Public Mus musculus 5 Dok7 23 108 98 CCDS HistoryNCBI Gene:231134Re-query CCDS DB by CCDS ID:89911.1Re-query CCDS DB by GeneID:231134See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89911.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114270.7 ENSMUSP00000109909.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114270.7Link to Ensembl Protein Viewer:ENSMUSP00000109909.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114270Re-query CCDS DB by Protein ID:ENSMUSP00000109909
Original member Current member NCBI NM_001348274.1 NP_001335203.1 Accepted alive Link to Nucleotide Sequence:NM_001348274.1Link to Protein Sequence:NP_001335203.1Re-query CCDS DB by Nucleotide ID:NM_001348274Re-query CCDS DB by Protein ID:NP_001335203Link to BLAST:NP_001335203.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335203.1 504 Q18PE0-1 504 100% 0 0

Chromosomal Locations for CCDS 89911.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 35056935 35056988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35057092 35057137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35064334 35064564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35066450 35066650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35075303 35075422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35077148 35077267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35079031 35079773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGACCGAGGCAGCGCTGGTGGAGGGCCAGGTCAAGCTGCGGGACGGCAAGAAGTGGAAGAGTAGGTGGC
TGGTGCTGCGCAAGCCATCGCCGGTGGCAGACTGCCTGCTGATGCTGGTCTACAAGGACAAATGTGAACG
CTCCAAGGGCCTTCGGGAGCGCAGCAGCCTCACCCTGGAGGACATCTGTGGCCTGGAGCCTGCCCTGCCC
TATGAGGGCCTGGCCCACACTCTGGCCATCATCTGCCTGTCTCAGGCTGTTATGCTGGGCTTCGATAGCC
ATGAGGCCATGTGTGCCTGGGATACCCGTATCCGCTACGCACTGGGCGAGGTGCACAGGTTCCATGTGAC
AGTAGCTCCTGGTACCAAACTGGAGAGTGGTCCAGCCACTCTTCACCTCTGCAATGACATTCTGGTCCTG
GCCAGAGACATCCCTCCAACCGTCATGGGGCAGTGGAAGCTGTCTGACCTCCGGCGTTACGGGGCTGTTC
CGAATGGATTCATCTTCGAAGGCGGGACCAGGTGTGGGTACTGGGCTGGAGTCTTCTTCTTGTCATCAGC
TGAGGGAGAGCAGATGAGCTTCCTGTTTGACTGCATCGTCCGAGGCATCTCCCCGACCAAAGGCCCGTTT
GGGCTTCGGCCAGTTCTCCCAGACCCGAGTTCTGGGGGACCCTCAGCCTCAGAAGAGCGTGTTGCCCAGG
AAGCACTGGAAGCCCTGCAGCTAGAGAAGAGGCTCAGCCTGCTTTCTCACTCTGGCCGGCCAGGCAGTGG
AGGGGATGACAGAAGTCTATCCAGTTCCTCTTCTGAGGCTAGCCACTCGGACATCAGCGCCAGCAGCAGG
CTCACTGCGTGGCCGGAGCAGTCCTCATCCTCGGCCGGCACATCACAAGAAGGACCAGGGCTGGTGGCTG
CCCAGGGCCCAGGAGAAGCCATGCTGGGAGCCTCAAGGCCACCCCTCAAGCCACTGCGGCCTCGGCAGTT
ACAGGAGGTTGGCCGCCAGAGCTCCTCTGACAGTGGCATTGCCACAGGCAGCCACTCCTCTTACTCTGGC
AGCTTCTCCTCTTATGCCGGCAGCAACCTGGACGTGTGGCGGGCCGGTGAGGAATTCGGTTCTCTGCTCA
GTCTGCCCCCTGGAGCCAGCGCACCTGAGCCCAGACTGTGTGCCTGCCCACCTGGGGCGGCCGAGTACCA
GGTGCCCACGTCACTGAGACACCACTATGACACACCTCGAAGCCTGCGCCAGGCCCCCAGAGACCCAAGC
CCAGCTTCTCAGGGCAGCTCTGACCACGGTTCAGCCACAGACTTGGGTGGTCAGGCGCCCACAGGGTGTC
CCTCCAGTTGGCTGGGAGCTCGCCGACGGGGACAGGCAACGGAAGGCCCAGGCAGTGACGCTGCGCTGCC
GAGTCCATCCCCTGGCGAGTCCTGGGAAGCAGGCAGCCCCCATGCAGGGCCGCCTCCAGCTTTCTTTTTG
TCATGTTCAATCTGTGGCGGACTCAAGGTAAAGCCCCCTCCCTGA

Translation (504 aa):
MTEAALVEGQVKLRDGKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALP
YEGLAHTLAIICLSQAVMLGFDSHEAMCAWDTRIRYALGEVHRFHVTVAPGTKLESGPATLHLCNDILVL
ARDIPPTVMGQWKLSDLRRYGAVPNGFIFEGGTRCGYWAGVFFLSSAEGEQMSFLFDCIVRGISPTKGPF
GLRPVLPDPSSGGPSASEERVAQEALEALQLEKRLSLLSHSGRPGSGGDDRSLSSSSSEASHSDISASSR
LTAWPEQSSSSAGTSQEGPGLVAAQGPGEAMLGASRPPLKPLRPRQLQEVGRQSSSDSGIATGSHSSYSG
SFSSYAGSNLDVWRAGEEFGSLLSLPPGASAPEPRLCACPPGAAEYQVPTSLRHHYDTPRSLRQAPRDPS
PASQGSSDHGSATDLGGQAPTGCPSSWLGARRRGQATEGPGSDAALPSPSPGESWEAGSPHAGPPPAFFL
SCSICGGLKVKPPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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