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Report for CCDS16021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16021.1 Public Mus musculus 2 Acvr2a 23 108 98 CCDS HistoryNCBI Gene:11480Re-query CCDS DB by CCDS ID:16021.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16021.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063886.3 ENSMUSP00000067305.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063886.3Link to Ensembl Protein Viewer:ENSMUSP00000067305.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000063886Re-query CCDS DB by Protein ID:ENSMUSP00000067305
Original member Current member NCBI NM_007396.4 NP_031422.3 Accepted alive Link to Nucleotide Sequence:NM_007396.4Link to Protein Sequence:NP_031422.3Re-query CCDS DB by Nucleotide ID:NM_007396Re-query CCDS DB by Protein ID:NP_031422Link to BLAST:NP_031422.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031422.3 513 P27038 513 100% 0 0

Chromosomal Locations for CCDS 16021.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 48814772 48814826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48870289 48870496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48873057 48873166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48873319 48873473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48890298 48890441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48892129 48892272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48893507 48893652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48894666 48894780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48896972 48897110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48898478 48898608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 48899594 48899788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1542 nt):
ATGGGAGCTGCTGCAAAGTTGGCGTTCGCCGTCTTTCTTATCTCTTGCTCTTCAGGTGCTATACTTGGCA
GA
TCAGAAACTCAGGAGTGTCTTTTCTTTAATGCTAATTGGGAAAGAGACAGAACCAACCAGACTGGTGT
T
GAACCTTGCTATGGTGATAAAGATAAACGGCGACATTGTTTTGCTACCTGGAAGAATATTTCTGGTTCC
ATT
GAAATAGTGAAGCAAGGTTGTTGGCTGGATGATATCAACTGCTATGACAGGACTGATTGTATAGAAA
AA
AAAGACAGCCCTGAAGTGTACTTTTGTTGCTGTGAGGGCAATATGTGTAATGAAAAGTTCTCTTATTT
T
CCGGAGATGGAAGTCACACAGCCCACTTCAAATCCTGTTACACCGAAGCCACCCTATTACAACATTCTG
CTG
TATTCCTTGGTACCACTAATGTTAATTGCAGGAATTGTCATTTGTGCATTTTGGGTGTACAGACATC
AC
AAGATGGCCTACCCTCCTGTACTTGTTCCTACTCAAGACCCAGGACCACCCCCACCTTCCCCATTACT
A
GGGTTGAAGCCATTGCAGCTGTTAGAAGTGAAAGCAAGGGGAAGATTTGGTTGTGTCTGGAAAGCCCAG
TTG
CTCAATGAATATGTGGCTGTCAAAATATTTCCAATACAGGACAAACAGTCCTGGCAGAATGAATATG
AA
GTCTATAGTCTACCTGGAATGAAGCATGAGAACATACTACAGTTCATTGGTGCAGAGAAAAGAGGCAC
C
AGTGTGGATGTGGACCTGTGGCTAATCACAGCATTTCATGAAAAGGGCTCACTGTCAGACTTTCTTAAG
GCT
AATGTGGTCTCTTGGAATGAACTTTGTCATATTGCAGAAACCATGGCTAGAGGATTGGCATATTTAC
AT
GAGGATATACCTGGCTTAAAAGATGGCCACAAGCCTGCAATCTCTCACAGGGACATCAAAAGTAAAAA
T
GTGCTGTTGAAAAACAATCTGACAGCTTGCATTGCTGACTTTGGGTTGGCCTTAAAGTTCGAGGCTGGC
AAG
TCTGCAGGTGACACCCATGGGCAGGTTGGTACCCGGAGGTATATGGCTCCAGAGGTGTTGGAGGGTG
CT
ATAAACTTCCAAAGGGACGCATTTCTGAGGATAGATATGTACGCCATGGGATTAGTCCTATGGGAATT
G
GCTTCTCGTTGCACTGCTGCAGATGGACCCGTAGATGAGTACATGTTACCATTTGAGGAAGAAATTGGC
CAG
CATCCATCTCTTGAAGATATGCAGGAAGTTGTTGTGCATAAAAAAAAGAGGCCTGTTTTAAGAGATT
AT
TGGCAGAAACATGCAGGAATGGCAATGCTCTGTGAAACGATAGAAGAATGTTGGGATCATGATGCAGA
A
GCCAGGTTATCAGCTGGATGTGTAGGTGAAAGAATTACTCAGATGCAAAGACTAACAAATATCATTACT
ACA
GAGGACATTGTAACAGTGGTCACAATGGTGACAAATGTTGACTTTCCTCCCAAAGAATCTAGTCTAT
GA


Translation (513 aa):
MGAAAKLAFAVFLISCSSGAILGRSETQECLFFNANWERDRTNQTGVEPCYGDKDKRRHCFATWKNISGS
I
EIVKQGCWLDDINCYD
RTDCIEKKDSPEVYFCCCEGNMCNEKFSYFPEMEVTQPTSNPVTPKPPYYNIL
L
YSLVPLMLIAGIVICAFWVYRHHKMAYPPVLVPTQ
DPGPPPPSPLLGLKPLQLLEVKARGRFGCVWKAQ
L
LNEYVAVKIFPIQ
DKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLK
A
NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISH
RDIKSKNVLLKNNLTACIADFGLALKFEAG
K
SAGDTHGQ
VGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIG
Q
HPSLEDMQEVVVHKKKRPVLRDYWQKHA
GMAMLCETIEECWDHDAEARLSAGCVGERITQMQRLTNIIT
T
EDIVTVVTMVTNVDFPPKESSL




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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